Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12- 23] 156 sequences; 39,900,209 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq88 232 8e-55 seq61 100 3e-15 seq83 93.3 5e-13 >seq88 Length=4649774 Score = 232 bits (256), Expect = 8e-55 Identities = 336/471 (71%), Gaps = 19/471 (4%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||||||||||||||| |||| ||| |||| ||||||||||| |||| |||||| || Sbjct 2234712 TGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAG 2234653 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||| || || || | ||||| ||||| ||||| | || || | || ||| Sbjct 2234652 TAGCCGTTCGTACCGGCGATGTAGGAGCCGGTCGCGCGGATGTTATGAATGCTCAAACCG 2234593 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || |||||||| | |||||| |||||||| ||| |||||||||||||||||||| || Sbjct 2234592 ATACCGCCGGCGGTCTTGGAAATGAGCGCACACGTCTTGAGCGTGTCGTAGATGCCTTCA 2234533 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 ||||| ||| ||||||| || || || || ||||| |||||||| | ||| ||| Sbjct 2234532 ATCGAATCGTCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCG 2234473 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA-GGT 1630364 |||||||||||||| |||| || ||| || | || |||||| || ||| | Sbjct 2234472 GCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATGAGGTTGTACGAC 2234413 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 || || |||||| || | |||| | || | | ||||| |||||| Sbjct 2234412 TGCAAG-ACGCGC------------TCGATGTCGTGA---CCGTGGATGCCGACGGCGAC 2234369 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCG-CGCACCTTGGTCAGGTAGG 1630483 |||||||||||||| ||| || || ||| |||| |||| || | | || ||||| Sbjct 2234368 GCGCATGAGCATGTGCTGCGGTCGTTCGGCGACCTTGCCGTCGATGCGAAG-CAAGTAGG 2234310 Query 1630484 ACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGT 1630534 | || | || ||| |||||||||| || ||||||||||||||| Sbjct 2234309 AGCGCTCGAGCGTTTTGAAGCCAAAGTAGTTGTAGCCAAAATCGCGGTCGT 2234259 Score = 136 bits (150), Expect = 5e-26 Identities = 297/451 (66%), Gaps = 2/451 (0%) Strand=Plus/Minus Query 1628151 GGGCGACGAAAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTT 1628210 ||||| ||| ||| | |||||||||||||||||| | ||| | |||| || ||||| Sbjct 2235163 GGGCGCCGAGTACTCAATGATCTCGGTGCACAGGTTCGAGGACTTGATCGTGCCAAGGTT 2235104 Query 1628211 CTGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTC 1628270 || ||||| | || ||| |||||||||||| ||||||| | || |||||| || Sbjct 2235103 CTTTTGGTTCGATTTCTTGTTTGCGGCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTC 2235044 Query 1628271 GATCTGCGCCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCA-CGACAGTCCGCGCGC 1628329 || ||| || ||| || || |||| | || ||||||| | || | || |||| Sbjct 2235043 GACCTGGGCTTCGAGAATCGCGTACCAAAGCTTTTGCGCGGGGATCGTCT-TCTTGGCGC 2234985 Query 1628330 GGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCA 1628389 |||||| || | |||| ||| ||||| | Sbjct 2234984 GGCCCTCCTTTTCGTATTTCTCGAACAGGGCGCGGAACTCTTCGCCATAGACTTCGTGGA 2234925 Query 1628390 GGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCA 1628449 ||||||| || |||| || || ||||| | ||| ||||| ||| | | | || || Sbjct 2234924 GGCCGGGGGCTTCGGCGGGGCAGAAGAGGGGCCACTCGCCGGCGGCCTCGACACGCTCCA 2234865 Query 1628450 TAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGC 1628509 ||||||| || |||| || || | ||||| || || || ||| |||||||||| Sbjct 2234864 TAAAGAGATCCGGAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGC 2234805 Query 1628510 CGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGC 1628569 |||||||||| ||||| || | |||| | ||| ||||||||||| || |||||| Sbjct 2234804 CGTGGTTCTTGCGAAGGTCCAGGAACTCGAAGACGTCAGCGTGCCACGGTTCGAGGTAGA 2234745 Query 1628570 AGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 || ||||| || |||||| ||| || Sbjct 2234744 TCGCGAAGGCTCCAGGACGCTTGTTGCCACC 2234714 Score = 95.1 bits (104), Expect = 1e-13 Identities = 167/241 (69%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 1626982 TGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCG 1627041 ||||||||||| |||| ||| || || | |||| | || |||| ||||||||||| Sbjct 2236312 TGGTCGACGGTGAACTTGATCGCACCGACAGCGGCGCGCGTACGCAAGTAGTACATGCCC 2236253 Query 1627042 GTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGCG 1627101 ||||| || || || ||| ||||| |||||||||||||| || | ||| | | Sbjct 2236252 GTCTTCAGTCCTCGCTTCCAGCCGTAGAAGTGCATCGACGTGAGTTGCGCCATCGTTGGG 2236193 Query 1627102 -TCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCGC 1627160 ||| | ||| | ||| ||||| || |||||| | ||| | || ||||| | Sbjct 2236192 CTCGAC-AAGTGAATGTTTAGCGATTGCGACTGGTCAATGAAGGCACCTCGGTCGGCGGA 2236134 Query 1627161 CATGTCGATGGTGACCCGGTTGGGCACCTCCCACACGGTCTTGAAGATGGCCTTGAGGTC 1627220 || |||||| || | | | | |||||| ||||||||| |||| |||||||| || Sbjct 2236133 CAAGTCGATAATGGTCTTTTGCGAGATCTCCCAGACGGTCTTGTAGATTGCCTTGAGATC 2236074 Query 1627221 G 1627221 | Sbjct 2236073 G 2236073 >seq61 Length=3738257 Score = 100 bits (110), Expect = 3e-15 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCC-GTG 19111 ||||| || ||||| |||||||| ||||||| ||| || ||||| ||||| ||| Sbjct 357428 ATCGGTGGTACGGTCACGTGCGTTATCCGCAACGCTCCGTTCGGTCTCGGAGAGCCCGTG 357369 Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171 || |||||| | || ||| | ||||||||||||||||||||||| || |||||||| Sbjct 357368 -TTCGACAAGTTGGAAGCCCTTTTGGCCCACGCCATGCTGTCGATCCCCGCAACCAAGGG 357310 Query 19172 ATTCGAGATTGG 19183 || |||||||| Sbjct 357309 CTTTGAGATTGG 357298 >seq83 Length=2022715 Score = 93.3 bits (102), Expect = 5e-13 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| ||| || ||| | | ||||| || || | |||||| |||||||||| || Sbjct 697614 GCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCGAGGTCTGAATCTCGCGCGATGAGA 697673 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 |||| ||| | |||| || ||| || | |||||| | ||| || |||| Sbjct 697674 TCGTCGACTTGTGGTTGT---AGGTCGCGAGCTTGGATGCCTCGAGGGAGATACGTTCGA 697730 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || ||||| |||||| ||||| ||| ||||| Sbjct 697731 AGATGTCGTTGACGAACGAGTTGAGGATGAGCATCGCCTTGTTCGAGATACCCGTGTCGG 697790 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 | || || ||||| | ||||||| Sbjct 697791 GATGGACTTGCTTCAACACCTTG 697813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107126397909452