Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12- 23] 156 sequences; 39,900,209 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq77 114 1e-20 seq61 91.5 1e-13 seq88 82.4 6e-11 >seq77 Length=1773113 Score = 114 bits (126), Expect = 1e-20 Identities = 278/408 (68%), Gaps = 15/408 (4%) Strand=Plus/Plus Query 34204 GGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAG-CGT-GCCGTGAT 34261 || ||||| || || ||||||| |||| || || | | | ||| | ||| |||| | | Sbjct 1122380 GGGGGGTTCTTAAGGATGAAGGCCGTGAGTTTGTG-GCGCA-TGTCGACGTTGCCGCGCT 1122437 Query 34262 AACCGCATGCTTTGCAGCCCTGACAGATAATG--TTCTTTTTAGCGGACACGATGAGCTC 34319 |||||||| |||||| | || || ||| ||| | || | | | ||||||||| Sbjct 1122438 TGCCGCATGCCTTGCAGTC---ACGGAGGATGAATTCGTCTTTG--GTAATGATGAGCTC 1122492 Query 34320 AGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAG 34379 || || ||||| | || || || | ||| |||||| |||||| | || |||| Sbjct 1122493 CGTTTCGGGGTTCTTGCACGACGCGCATAGCACGAACTTGTCGATGAAGACGTCGAGCAA 1122552 Query 34380 GTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATC 34439 ||| | | | | ||||| | ||||||||||||| | |||||| | | | | Sbjct 1122553 GTCACGCAGACGATTCGTCTCGTGCGCGCCGTTGACGATGTAGCGTTCGGTCTCATCGTT 1122612 Query 34440 GACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACG 34499 || || || ||||| || |||||||| ||| | || |||||||| | ||| || Sbjct 1122613 GAAGGTCGCCTGGGCGCCGAGTTCGCACCCAAAGAATTTCGTCGGGTACGACGACGGGCG 1122672 Query 34500 -TCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCT 34558 | |||| || || | || | ||||||| | ||||||||||||||||||||| Sbjct 1122673 ATTCAAG-GCTCGCGCAACATCAGCCATGTTGGGAAAGACAGTCTTGATGCCGTTGCCGC 1122731 Query 34559 TTCCTTCGACCTTGGCGCAGA-TGCGCGGCATTTTGTAGCGGTAGAAC 34605 || |||| ||||| ||| || | ||||| ||||||||||||||| Sbjct 1122732 GGCCCTCGATCTTGGTCAAGAGTGAG-GGCATCTTGTAGCGGTAGAAC 1122778 >seq61 Length=3738257 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 |||||||| || ||||| || | |||||||| || ||||| |||| || | ||| | Sbjct 597677 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATTACGCTCGAGGTCGAATCCTCA 597736 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || ||| | | || || |||||| ||||| || ||| | ||| || || Sbjct 597737 -GACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCA 597795 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || | || | ||||| || ||||| ||||| | | | || | || |||||||| Sbjct 597796 GCAGCGATTGATCTTCGCGGGCAAGCAGCTTGAGGACGGCCGCACGCTCGCCGATTACAA 597855 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500 ||| || || || || ||| ||||| ||||| | | || ||||||||| Sbjct 597856 CATCCAGAAGGAGTCGACGCTGCACTTGGTGCTCCGTCTCCGAGGGGGA 597904 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 |||||||| |||||||| || || |||||||| || || || |||| || | ||| Sbjct 597449 ATGCAAATCTTTGTCAAGACCTTGACCGGCAAGACGATCACACTCGAGGTCGAATCCTCG 597508 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| ||| | | || || |||||| ||||| || ||| | ||| || || Sbjct 597509 -GATACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCA 597567 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || | || | ||||| || ||||| ||||| | | | || | || |||||||| Sbjct 597568 GCAGCGATTGATCTTCGCGGGCAAGCAGCTTGAGGACGGCCGCACGCTCGCCGATTACAA 597627 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||| || || || || ||| ||||| ||||| | | || ||||| || Sbjct 597628 CATCCAGAAGGAGTCGACGCTGCACTTGGTGCTTCGCCTCCGAGGTGG 597675 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 |||||||| |||||||| || | |||||||| || || || |||| || | ||| Sbjct 596765 ATGCAAATTTTTGTCAAGACCCTGACCGGCAAGACGATCACACTCGAGGTCGAATCCTCG 596824 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| ||| | | || || |||||| ||||| || ||| | ||| || || Sbjct 596825 -GATACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCA 596883 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || | || | ||||| || ||||| ||||| | | | || | || |||||||| Sbjct 596884 GCAGCGATTGATCTTCGCGGGCAAGCAGCTTGAGGACGGCCGCACGCTCGCCGATTACAA 596943 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||| || || || || ||| ||||| ||||| | | || ||||| || Sbjct 596944 CATCCAGAAGGAGTCGACGCTGCACTTGGTGCTTCGCCTCCGAGGTGG 596991 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 |||||||| |||||||| || | |||||||| || ||||| |||| || | ||| Sbjct 596993 ATGCAAATCTTTGTCAAGACCCTGACCGGCAAGACGATTACGCTCGAGGTCGAATCCTCG 597052 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| ||| | | || || || ||| ||||| || ||| | ||| || || Sbjct 597053 -GATACGATCGACAACGTCAAGGCCAAAATTCAGGACAAGGAGGGCATTCCCCCCGACCA 597111 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || | || | ||||| || ||||| ||||| | | | || | || |||||||| Sbjct 597112 GCAGCGATTGATCTTCGCGGGCAAGCAGCTTGAGGACGGCCGCACGCTCGCCGATTACAA 597171 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||| || || || || ||| ||||| ||||| | | || ||||| || Sbjct 597172 CATCCAGAAGGAGTCGACGCTGCACTTGGTGCTTCGCCTCCGAGGTGG 597219 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 |||||||| || ||||| || | |||||||| || ||||| |||| || | ||| | Sbjct 597221 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATTACGCTCGAGGTCGAATCCTCA 597280 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || ||| | | || || |||||| ||||| || ||| | ||| || || Sbjct 597281 -GACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCA 597339 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || | || | ||||| || ||||| ||||| | | | || | || |||||||| Sbjct 597340 GCAGCGATTGATCTTCGCGGGCAAGCAGCTTGAGGACGGCCGCACGCTCGCCGATTACAA 597399 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||| || || || || ||| ||||| ||||| | | || ||||| || Sbjct 597400 CATCCAGAAGGAGTCGACGCTGCACTTGGTGCTTCGCCTCCGAGGTGG 597447 >seq88 Length=4649774 Score = 82.4 bits (90), Expect = 6e-11 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 110275 GCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGACGA 110334 |||||| || ||||| || | || ||||| || || ||| |||| ||| | ||| Sbjct 184611 GCAAATCTTCGTCAAGACACTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 184670 Query 110335 TACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACA 110394 || ||| | | || ||| ||||| ||||| |||||| | || || || || Sbjct 184671 CACGATCGACAACGTCAAAACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGCA 184730 Query 110395 AAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACAT 110454 | | || || | ||| || || ||||| ||||||| | | || |||| || |||||||| Sbjct 184731 ACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACAT 184790 Query 110455 TCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||| || || || | ||| |||| | | || ||||| || Sbjct 184791 TCAAAAGGAGTCGACCCTCCACTTGGTCCTCCGCCTCCGAGGTGG 184835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412840815084908