Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12- 23] 156 sequences; 39,900,209 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq88 183 5e-40 seq83 109 9e-18 seq84 107 3e-17 >seq88 Length=4649774 Score = 183 bits (202), Expect = 5e-40 Identities = 196/259 (76%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| |||||||| |||| ||| |||| ||||||||||| || | |||||| || Sbjct 2234712 TGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAG 2234653 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | |||||| || || || | ||||| ||| | ||||| | || || | || ||| Sbjct 2234652 TAGCCGTTCGTACCGGCGATGTAGGAGCCGGTCGCGCGGATGTTATGAATGCTCAAACCG 2234593 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || |||||||| | |||||| |||||||| ||| | || ||||| ||||||||||| || Sbjct 2234592 ATACCGCCGGCGGTCTTGGAAATGAGCGCACACGTCTTGAGCGTGTCGTAGATGCCTTCA 2234533 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 ||||| ||| ||||||| | ||| || || ||||| |||||| | | ||| ||| Sbjct 2234532 ATCGAATCGTCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCG 2234473 Query 2073781 GCATTGAAGAGCGTGGGCG 2073799 || ||||||||||| |||| Sbjct 2234472 GCGTTGAAGAGCGTCGGCG 2234454 Score = 145 bits (160), Expect = 1e-28 Identities = 298/449 (66%), Gaps = 0/449 (0%) Strand=Plus/Minus Query 2071564 GGCGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTC 2071623 |||| ||| ||| | || ||||||||||||||| | ||| | | ||||| |||||| Sbjct 2235162 GGCGCCGAGTACTCAATGATCTCGGTGCACAGGTTCGAGGACTTGATCGTGCCAAGGTTC 2235103 Query 2071624 TGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCG 2071683 | ||||| || ||| |||||||||||| |||||| | || || || ||| Sbjct 2235102 TTTTGGTTCGATTTCTTGTTTGCGGCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTCG 2235043 Query 2071684 ATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGG 2071743 | ||| || || || || |||||| | ||||||| | || || | |||||| Sbjct 2235042 ACCTGGGCTTCGAGAATCGCGTACCAAAGCTTTTGCGCGGGGATCGTCTTCTTGGCGCGG 2234983 Query 2071744 CCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGG 2071803 |||| | |||||| || | |||| | | ||||| ||| Sbjct 2234982 CCCTCCTTTTCGTATTTCTCGAACAGGGCGCGGAACTCTTCGCCATAGACTTCGTGGAGG 2234923 Query 2071804 CCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATA 2071863 ||||| || |||| ||||| ||||| | ||| |||||| | | | | || || |||| Sbjct 2234922 CCGGGGGCTTCGGCGGGGCAGAAGAGGGGCCACTCGCCGGCGGCCTCGACACGCTCCATA 2234863 Query 2071864 AACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCG 2071923 || || || |||| || | | |||||||| || || ||| |||||||||||| Sbjct 2234862 AAGAGATCCGGAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCG 2234803 Query 2071924 TGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAG 2071983 |||||||| ||||| || | |||| || ||| ||||||||||| || |||||| Sbjct 2234802 TGGTTCTTGCGAAGGTCCAGGAACTCGAAGACGTCAGCGTGCCACGGTTCGAGGTAGATC 2234743 Query 2071984 GCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 || ||||| || |||||| ||| || Sbjct 2234742 GCGAAGGCTCCAGGACGCTTGTTGCCACC 2234714 Score = 98.7 bits (108), Expect = 2e-14 Identities = 142/196 (72%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 2070051 CGCCGCATGGTAGATCGTCTCAAAGATGGTGCG-GTTGAGGCGACGCGCGCCGGCGCTCT 2070109 ||| || |||||||| ||||| ||||| ||| |||||| ||||| ||| | Sbjct 2235463 CGCGGCGTGGTAGATGGTCTCGAAGATT-TGCTTGTTGAGCTTGCGCGCCTCGGGCGAAT 2235405 Query 2070110 CCCACGGCAGGTCCATCATGGCA--AACGCGTCGGCCAGGCCCTGCACGCCGACGCCCAT 2070167 | |||||| ||| ||| || ||||||||||| || || ||||| |||| ||| || Sbjct 2235404 CGAACGGCATCGCCA--ATGCCATGAACGCGTCGGCGAGCCCTTGCACTCCGATGCCGAT 2235347 Query 2070168 CGGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGAT 2070227 || |||||||| | ||| |||| | | |||||| || || |||| ||||| |||||| Sbjct 2235346 GGGGCGGTGGCGGAAGTTGGAGTACTGCGCCTCGATGACGGGATAGTAGTTGACGTCGAT 2235287 Query 2070228 CACGCGGTTGAGGTTG 2070243 | |||||| | |||| Sbjct 2235286 GATGCGGTTCAAGTTG 2235271 Score = 87.8 bits (96), Expect = 3e-11 Identities = 168/243 (69%), Gaps = 10/243 (4%) Strand=Plus/Minus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 ||||||||||| |||| ||| || | | || | || || |||| ||||||||||| Sbjct 2236312 TGGTCGACGGTGAACTTGATCGCACCGACAGCGGCGCGCGTACGCAAGTAGTACATGCCC 2236253 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGA-TGGACTCGGCATTCGG 2069369 ||||| || || || ||| ||||| |||||||||||||| | | | | || || Sbjct 2236252 GTCTTCAGTCCTCGCTTCCAGCCGTAGAAGTGCATCGACGTGAGTTGCGCCATCGTTGGG 2236193 Query 2069370 GACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGC 2069429 || || ||| | ||| ||||| || |||||| | ||| | |||||||| | Sbjct 2236192 CTCGACA-AGTGAATGTTTAGCGATTGCGACTGGTCAATGAAGGCACCTCGGTCGGCGGA 2236134 Query 2069430 CATGTCG---ATGGTCACGCGGTTG-GACACCTCCCACACGGTCTTGAACAGGGCCTTGA 2069485 || |||| ||||| | ||| || | |||||| ||||||||| | | ||||||| Sbjct 2236133 CAAGTCGATAATGGT----CTTTTGCGAGATCTCCCAGACGGTCTTGTAGATTGCCTTGA 2236078 Query 2069486 GAT 2069488 ||| Sbjct 2236077 GAT 2236075 >seq83 Length=2022715 Score = 109 bits (120), Expect = 9e-18 Identities = 161/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 |||| || || || |||| ||||||| ||| ||| || ||| | | ||||| || || | Sbjct 697590 CCTTTGTGCCTTCCGAGATGGCGTGCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCG 697649 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 |||||| |||||||| | |||||| ||| | |||| || ||| || | Sbjct 697650 AGGTCTGAATCTCGCGCGATGAGATCGTCGACTTGTGGTTGTAGGT---CGCGAGCTTGG 697706 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 |||||| | ||| || |||| ||||||||||| |||||||| | ||| ||||| Sbjct 697707 ATGCCTCGAGGGAGATACGTTCGAAGATGTCGTTGACGAACGAGTTGAGGATGAGCATCG 697766 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| ||| |||||| || || ||||| | ||||||| Sbjct 697767 CCTTGTTCGAGATACCCGTGTCGGGATGGACTTGCTTCAACACCTTG 697813 Score = 104 bits (114), Expect = 4e-16 Identities = 160/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 |||| ||||| || |||| ||||||| | | ||| || ||| | | ||||| || || | Sbjct 1472995 CCTTTGTACCTTCCGAGATGGCGTGCTTTGACAGCTCTCCGGGGAGGATCAATCGGACCG 1473054 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 |||||| ||||| || | |||||| ||| | |||| || ||| || | Sbjct 1473055 AGGTCTGAATCTCACGCGATGAGATCGTCGACTTGTGGTTGTAGGT---CGCGAGCTTGG 1473111 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 |||||| | ||| || |||| ||||||||||| |||||||| | ||| ||||| Sbjct 1473112 ATGCCTCGAGGGAGATACGTTCGAAGATGTCGTTGACGAACGAGTTGAGGATGAGCATCG 1473171 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| ||| |||||| || || ||||| | ||||||| Sbjct 1473172 CCTTGTTCGAGATACCCGTGTCGGGATGGACTTGCTTCAACACCTTG 1473218 Score = 100 bits (110), Expect = 5e-15 Identities = 154/217 (71%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 ||||||| || || |||| ||||||| ||| || ||| || | | ||||| ||| || | Sbjct 366056 CCTTGGTGCCTTCCGAGATGGCGTGCTTGGACAATTCTCCAGGAAGGATCAAGCGAACCG 365997 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG---CGCCAGGCGGC 1485601 |||||| |||||||| | |||||| || |||||| || ||| || | Sbjct 365996 AGGTCTGAATCTCGCGTGACGAGATCGTC--GC-CTTGTTGTTGTAGGTCGCGAGCTTGG 365940 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 |||||| | ||| || || | ||||||||||| |||||||| | ||| ||||| Sbjct 365939 ATGCCTCGAGGGAGATACGCTCAAAGATGTCGTTGACGAACGAGTTGAGGATGAGCATCG 365880 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTT 1485698 ||||| ||||| ||| ||||||||| || ||||| Sbjct 365879 CCTTGTTCGAGATACCCGTGTCGGGGTGGACTTGCTT 365843 >seq84 Length=1022938 Score = 107 bits (118), Expect = 3e-17 Identities = 145/199 (73%), Gaps = 5/199 (3%) Strand=Plus/Minus Query 796150 GCCTCGG-GTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 ||||||| | ||| ||||||| ||| || || ||| |||||| || || || Sbjct 125392 GCCTCGGCGGACT-GGACCTCACCAGAGAATCGCTCGACCAAGTTCTCGTTGACAATCCC 125334 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 |||| ||||||||||||||||||||||||| ||| |||| ||||||||| |||| Sbjct 125333 GTCGGAGGCGGCGAAAAAGGCGAGGACGTGCGAGATGAAGTAGCGCTCGTCGGGCTTGAG 125274 Query 796269 C---GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGA 796325 | | |||||| | | |||| | | ||| | ||| ||||||||||| ||||| Sbjct 125273 CTTGTTGTCCCAGTCGTGCATGTCCTTGGACAAGTCCATCTCTTCGGCGGTCCAGAAGGA 125214 Query 796326 GGCCTCGGCCTTTTTGTAC 796344 ||||||||||| |||||| Sbjct 125213 TGCCTCGGCCTTCTTGTAC 125195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916229805568484