Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12- 23] 156 sequences; 39,900,209 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq61 96.9 3e-15 seq88 87.8 2e-12 >seq61 Length=3738257 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137182 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 137241 || || ||||| | ||| | || || || | || || || || || |||||||||||| Sbjct 597906 TGTCCCCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCG 597847 Query 137242 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 137301 | |||| ||| || || || || || || |||||| || ||||| ||||| Sbjct 597846 GCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGG 597787 Query 137302 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCT 137361 || ||||| || ||||| ||| || || | | || | |||||||| || ||| Sbjct 597786 GGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCTGAGGATTCG 597727 Query 137362 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || || | || | |||||||||||||| || || ||||| ||||||||| Sbjct 597726 ACCTCGAGCGTAATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCATA 597676 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||||||| | |||| ||| || || || || || Sbjct 597417 GTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCC 597358 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||||| || ||||| ||||| || ||||| || ||||| ||| || || Sbjct 597357 GCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 597298 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | |||||||| || ||| || || | || | |||||||||||||| || Sbjct 597297 ACGTTGTCGATCGTGTCTGAGGATTCGACCTCGAGCGTAATCGTCTTGCCGGTCAGGGTC 597238 Query 137395 TTTACGAATATTTGCATA 137412 || ||||| ||||||||| Sbjct 597237 TTGACGAAGATTTGCATA 597220 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||||||| | |||| ||| || || || || || Sbjct 597189 GTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCC 597130 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||||| || ||||| ||||| || ||||| || ||||| |||||| || Sbjct 597129 GCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCCTTG 597070 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||| || | || ||| || || | || | |||||||||||||| || Sbjct 597069 ACGTTGTCGATCGTATCCGAGGATTCGACCTCGAGCGTAATCGTCTTGCCGGTCAGGGTC 597010 Query 137395 TTTACGAATATTTGCATA 137412 || || || ||||||||| Sbjct 597009 TTGACAAAGATTTGCATA 596992 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||||||| | |||| ||| || || || || || Sbjct 597645 GTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCC 597586 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||||| || ||||| ||||| || ||||| || ||||| ||| || || Sbjct 597585 GCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 597526 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||| || | || ||| || || | || | ||||||||||||||| || Sbjct 597525 ACGTTGTCGATCGTATCCGAGGATTCGACCTCGAGTGTGATCGTCTTGCCGGTCAAGGTC 597466 Query 137395 TTTACGAATATTTGCATA 137412 || || || ||||||||| Sbjct 597465 TTGACAAAGATTTGCATA 597448 >seq88 Length=4649774 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| ||||| | || | || || || | || || || ||||| |||||||| ||| Sbjct 184836 GCCACCTCGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGAATGTTGTAGTCGGC 184777 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| || ||||| || || || ||| |||| ||||||||||| || || || Sbjct 184776 CAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGG 184717 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||| ||||| || || ||| | | || | |||||| | | || || Sbjct 184716 GATGCCTTCCTTGTCTTGGATCTTGGTTTTGACGTTGTCGATCGTGTCGGACGACTCGAC 184657 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGC 137409 || | || | ||||||||| || | ||| || ||||| |||||| Sbjct 184656 CTCGAGGGTGATCGTCTTGCCCGTAAGTGTCTTGACGAAGATTTGC 184611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488543047339200