Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12- 23] 156 sequences; 39,900,209 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq88 201 2e-45 >seq88 Length=4649774 Score = 201 bits (222), Expect = 2e-45 Identities = 200/259 (77%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 259923 CGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGG 259982 |||| |||||||| || ||||| ||||| | ||||||| |||||| || || ||| | Sbjct 2234454 CGCCGACGCTCTTCAACGCCGGAACGCCTCACCCGCAGCTTTCGTCCTGTTTCCTGGTCA 2234513 Query 259983 ACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCT 260042 ||||||| ||||||||| || |||||||| |||||||||||| ||| |||||||| | Sbjct 2234514 CGATGAAGGACGATTCGATTGAAGGCATCTACGACACGCTCAAGACGTGTGCGCTCATTT 2234573 Query 260043 CCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACG 260102 ||||| | |||||||| |||||||| | || || | ||||| | ||| ||||| Sbjct 2234574 CCAAGACCGCCGGCGGTATCGGTTTGAGCATTCATAACATCCGCGCGACCGGCTCCTACA 2234633 Query 260103 TGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACA 260162 | || || || |||||| | || |||||| | || |||||||| || || | ||| ||| Sbjct 2234634 TCGCCGGTACGAACGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCTACAACAACA 2234693 Query 260163 CGGCGCGCTACGTCGACCA 260181 | ||||||||||||||||| Sbjct 2234694 CCGCGCGCTACGTCGACCA 2234712 Score = 127 bits (140), Expect = 3e-23 Identities = 303/460 (66%), Gaps = 14/460 (3%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| |||||| || ||||| || |||||| |||||||||||||| ||| || Sbjct 2234714 GGTGGCAACAAGCGTCCTGGAGCCTTCGCGATCTACCTCGAACCGTGGCACGCTGACGTC 2234773 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || | | |||||||| |||||||||||||| |||| ||| |||| || Sbjct 2234774 TTCGAGTTCCTGGACCTTCGCAAGAACCACGGCAA-GGAG-----GAAGTCCGCGCTCGT 2234827 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 |||||||| | | || |||| || || |||||| || | | | ||| | || Sbjct 2234828 GATCTCTTCTTTGCGCTCTGGATTCCGGATCTCTTTATGGAGCGTGTCGAGGCCGCCGGC 2234887 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027 || ||| | ||||| ||||| |||| || |||||||| |||||| |||||||| | Sbjct 2234888 GAGTGGCCCCTCTTCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTCTATGGCGAAGAG 2234947 Query 262028 TTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCG-TGCCCGC 262086 || |||||| | ||| | || | || | ||||| Sbjct 2234948 TTCCGCGCCCTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGA-AGACGATCCCCGC 2235006 Query 262087 ACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGT 262146 | | || | |||| || ||| ||| ||||| |||| ||||||| || | |||| | Sbjct 2235007 GCAAAAGCTTTGGTACGCGATTCTCGAAGCCCAGGTCGAAACCGGCAACCCGTTCATGCT 2235066 Query 262147 CTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGC 262206 |||||||||||||| ||| || ||||| ||||||| || ||||| || | Sbjct 2235067 CTACAAGGACGCCGCAAACAAGAAATCGAACCAAAAGAACCTTGG---CACGATCAAGTC 2235123 Query 262207 C---AACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCCC 262243 | |||||||||||||||||| | ||| ||| ||||| Sbjct 2235124 CTCGAACCTGTGCACCGAGATCATTGAGTACTCGGCGCCC 2235163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177796153513272