Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12- 23] 156 sequences; 39,900,209 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq61 131 2e-25 seq88 114 1e-20 seq73 109 5e-19 >seq61 Length=3738257 Score = 131 bits (144), Expect = 2e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | ||| |||||| || |||||||||||||| | || || |||| || Sbjct 597658 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTC 597599 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||||| ||||| || ||||| ||||||||||| | |||| || |||||||||| Sbjct 597598 AAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 597539 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 ||||| ||| | |||| | | ||| || ||||| ||||| | |||||||| | Sbjct 597538 AATCTTGGCCTTGA-CGTTGTCGATCGTATCCGAGGATTCGACCTCGAGTGTGATCGTCT 597480 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || ||||| || || ||||| || ||||| Sbjct 597479 TGCCGGTCAAGGTCTTGACAAAGATTTGCAT 597449 Score = 125 bits (138), Expect = 6e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | ||| |||||| || |||||||||||||| | || || |||| || Sbjct 596974 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTC 596915 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||||| ||||| || ||||| ||||||||||| | |||| || |||||||||| Sbjct 596914 AAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 596855 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 ||||| ||| | |||| | | ||| || ||||| ||||| | |||||||| | Sbjct 596854 AATCTTGGCCTTGA-CGTTGTCGATCGTATCCGAGGATTCGACCTCGAGTGTGATCGTCT 596796 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || |||| || || ||||| || ||||| Sbjct 596795 TGCCGGTCAGGGTCTTGACAAAAATTTGCAT 596765 Score = 125 bits (138), Expect = 6e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | ||| |||||| || |||||||||||||| | || || |||| || Sbjct 597202 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTC 597143 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||||| ||||| || ||||| ||||||||||| | |||| || |||||||||| | Sbjct 597142 AAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC-T 597084 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 || ||| || | |||| | | ||| || ||||| ||||| | ||| ||||| | Sbjct 597083 GAATTTTGGCCTTGACGTTGTCGATCGTATCCGAGGATTCGACCTCGAGCGTAATCGTCT 597024 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || |||| || || ||||| || ||||| Sbjct 597023 TGCCGGTCAGGGTCTTGACAAAGATTTGCAT 596993 Score = 125 bits (138), Expect = 6e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | ||| |||||| || |||||||||||||| | || || |||| || Sbjct 597430 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTC 597371 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||||| ||||| || ||||| ||||||||||| | |||| || |||||||||| Sbjct 597370 AAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 597311 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 ||||| ||| | |||| | | |||||| ||||| ||||| | ||| ||||| | Sbjct 597310 AATCTTGGCCTTGA-CGTTGTCGATCGTGTCTGAGGATTCGACCTCGAGCGTAATCGTCT 597252 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || |||| || || || || || ||||| Sbjct 597251 TGCCGGTCAGGGTCTTGACGAAGATTTGCAT 597221 Score = 125 bits (138), Expect = 6e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | ||| |||||| || |||||||||||||| | || || |||| || Sbjct 597886 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTC 597827 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||||| ||||| || ||||| ||||||||||| | |||| || |||||||||| Sbjct 597826 AAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 597767 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 ||||| ||| | |||| | | |||||| ||||| ||||| | ||| ||||| | Sbjct 597766 AATCTTGGCCTTGA-CGTTGTCGATCGTGTCTGAGGATTCGACCTCGAGCGTAATCGTCT 597708 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || |||| || || || || || ||||| Sbjct 597707 TGCCGGTCAGGGTCTTGACGAAGATTTGCAT 597677 Score = 125 bits (138), Expect = 6e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | ||| |||||| || |||||||||||||| | || || |||| || Sbjct 872052 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTC 871993 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||||| ||||| || ||||| ||||||||||| | || | | ||||||||| Sbjct 871992 AAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCTTG 871933 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 ||||| ||| | |||| | | |||||| ||| || ||||| | ||||||||| | Sbjct 871932 AATCTTGGTCTTGA-CGTTGTCAATCGTGTCCGACGACTCGACCTCGAGCGTGATCGTCT 871874 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | ||||| | || || ||||| |||||||| Sbjct 871873 TGCCCGTAAGCGTCTTGACAAAGATCTGCAT 871843 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | ||| |||||| || || ||||| ||||| Sbjct 872297 CCACCACGAAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCG 872238 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || |||||||| |||||||| ||||| ||||||||||| | ||| Sbjct 872237 AGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAAGATCAATCGCTGCTGGTCGGGGGGA 872178 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || |||||| ||| |||||| ||| | |||| | | ||| || ||||| || Sbjct 872177 ATGCCCTCCTTATCCTGGATCTTGGCCTTGA-CGTTGTCGATCGTATCCGAGGATTCGAC 872119 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||| ||||| || || |||| || || ||||| || ||||| Sbjct 872118 CTCGAGCGTAATCGTCTTGCCGGTCAGGGTCTTGACAAAGATTTGCAT 872071 >seq88 Length=4649774 Score = 114 bits (126), Expect = 1e-20 Identities = 154/210 (73%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| ||||||||||| || | || || |||||||| || ||||| Sbjct 184800 CTCCTTTTGAATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 184741 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGA-G 35663 || | || |||||||| | || | || |||||||| |||| ||| || || | Sbjct 184740 GATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATC--TTGGTTTTGACG 184683 Query 35664 TTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 ||| | | ||||||| ||| || ||||| | |||||||| || ||||| | || || Sbjct 184682 TTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGTGTCTTG 184623 Query 35723 ACAAATATCTGCATTCTGTGCGCACACACA 35752 || || || ||| | || | |||||||| Sbjct 184622 ACGAAGATTTGCCT--GGTTCACACACACA 184595 >seq73 Length=1807266 Score = 109 bits (120), Expect = 5e-19 Identities = 162/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | || ||||||||| |||||||| |||||| Sbjct 313159 CCACCACGCAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCC 313100 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || || |||||||| || ||||| || | || |||||||| | || Sbjct 313099 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGGGGG 313040 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | ||||||||| |||||| ||| | |||| | | ||| ||| ||| || || Sbjct 313039 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATCGTATCGGACGACTCGAC 312981 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCA 35735 ||| | ||||| || || ||||| | || || ||||| || |||| Sbjct 312980 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCA 312934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450792720952480