Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12- 23] 156 sequences; 39,900,209 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq88 123 3e-23 seq73 122 1e-22 seq102 114 2e-20 seq84 111 2e-19 >seq88 Length=4649774 Score = 123 bits (136), Expect = 3e-23 Identities = 516/806 (64%), Gaps = 19/806 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| |||||||||| ||| |||| || || || | ||||| || ||| Sbjct 2234348 CCGCAGCACATGCTCATGCGCGTCGCCGTCGGCATCCACGGTCACGACATCGAGCGCGTC 2234407 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 ||| || | ||| || |||||| | | || | ||||| | || || |||||| Sbjct 2234408 TTGCAGTCGTACAACCTCATGTCCGAGCGCTACTTTACCCACGCCTCGCCGACGCTCTTC 2234467 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || || || || || || | || || ||||| || | | ||||| || Sbjct 2234468 AACGCCGGAACGCCTCACCCGCAGCTTTCGTCCTGTTTCCTGGTCACGATGAAGGACGAT 2234527 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || || | || ||||| | || || | | |||||||| || || ||| || || Sbjct 2234528 TCGATTGAAGGCATCTACGACACGCTCAAGACGTGTGCGCTCATTTCCAAGACCGCCGGC 2234587 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-ACAA 104519 ||||| || || ||| ||| | | | || | ||| || ||| || || | Sbjct 2234588 GGTATCGGTTTGAGCATTCATAACATCCGCGCGACCGG--CTCCTACATCGCCGGTACGA 2234645 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || | || | || || | || ||||| || || | ||| ||| |||||||| | Sbjct 2234646 ACGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCTACAACAACACCGCGCGCTACG 2234705 Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | | |||| ||| ||||| ||| | |||| |||| || || || |||| Sbjct 2234706 TCGACCAAGGTGGCAACAAGCGTCCT---GGAGCCTTCGCGATCTACCTCGAACCGTGGC 2234762 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGCG 104691 |||| || || | |||||||| || | || ||||| || | ||||| | |||| Sbjct 2234763 ACGCTGACGTCTTCGAGTTCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAAGTCCGCG 2234822 Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 | || |||||||||| || ||||||||||| |||||||| ||| || | || |||| Sbjct 2234823 CT--CGTGATCTCTTCTTTGCGCTCTGGATTCCGGATCTCTTTATGGAGCGTGTCGAGGC 2234880 Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811 ||| | ||| | ||||| || || | | | || || || ||| ||| | | || Sbjct 2234881 CGCCGGCGAGTGGCCCCTCTTCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTCTATGG 2234940 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGT 104871 || ||||| ||||| | | || ||||| | || || || || | |||| | Sbjct 2234941 CGAAGAGTTCCGCGCCCTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAGACGAT 2235000 Query 104872 GCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 104930 || || || | | | ||| | || |||||| | | || ||| || || | || | Sbjct 2235001 CCCCGC-GCAAAAGCTTTGGTACGCGATTCTCGAAGCCCAGGTCGAAACCGGCAACCCGT 2235059 Query 104931 ACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 104990 |||||| ||||| |||||| ||| | || || |||||||| | || ||||| Sbjct 2235060 TCATGCTCTACAAGGACGCCGCAAACAAGAAATCGAACCAAAAGAACCTTGGCACGATCA 2235119 Query 104991 AGAGTTCCAATCTCTGTACAGAAATC 105016 || || || || || || || ||| Sbjct 2235120 AGTCCTCGAACCTGTGCACCGAGATC 2235145 >seq73 Length=1807266 Score = 122 bits (134), Expect = 1e-22 Identities = 234/337 (69%), Gaps = 10/337 (3%) Strand=Plus/Plus Query 169160 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 169219 |||| || |||||||||||||| || || |||| ||| ||| | |||||||||||| Sbjct 1175194 TTGATGATCAGACCCTTGATGTGCGATCCATCGTGATCTTGATCGGCCATGATCATGAGC 1175253 Query 169220 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 169279 || || || ||| | || || || | || ||||| || |||||||||||| Sbjct 1175254 TTGCCGTAACGGAGCGAGTCGACGTCGGTGTAAACTTTGCCCTGCTGCAGACCCAAGATC 1175313 Query 169280 TTCTTGAGATCG-TTGAACTCTTGGT-TTGATGTGAGCTG-TGTGACAGAGGCATCGCGA 169336 | ||||| ||| ||||| ||| || ||| | || | | || | | || || || Sbjct 1175314 TGCTTGA--TCGCTTGAA-TCTCGGCATTGTCGAGAAGGGCTTTGCCCGCCGCTTCACGT 1175370 Query 169337 ACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAG 169396 || || |||| || || | |||||||||||| |||| || ||||| ||||| | Sbjct 1175371 ACGTTGAGCAACTTTCCTCGCAAAGGGAAGACACCATAGTTGTCTCGACCGACGACAGCC 1175430 Query 169397 AGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTT- 169455 ||||||| ||| || || | ||| || || || || ||||| | ||||||||| || || Sbjct 1175431 AGACCCGAGACGGCAAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGCGTGCACTTG 1175490 Query 169456 -TCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATC 169491 || | | | |||||| || || |||||||| || Sbjct 1175491 GACCCGTTCCT--CGTACCAGCGTTATTCGCATCTTC 1175525 >seq102 Length=717467 Score = 114 bits (126), Expect = 2e-20 Identities = 265/394 (67%), Gaps = 4/394 (1%) Strand=Plus/Plus Query 7232 CGCGTATACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAAC 7291 ||| | ||||||||||| || || ||| ||| || || ||| || || || ||| | Sbjct 83565 CGCTTCTACCAAGCCTCGACCTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAATCC 83624 Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 7351 ||| ||| ||||||||||| || ||| ||||| || | ||| | || ||| Sbjct 83625 GAGACGACGCCCTTCTACCCTCGTTCGCCTTACGGCGTTGCCAAGTTGTACGCCTTCTGG 83684 Query 7352 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 7411 ||||||| || ||||||||||| |||| ||| |||||| ||| ||| | |||||| Sbjct 83685 ATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCTTGTTCAAC 83744 Query 7412 CATGAATCACCGAGACGAGGT-GCAGACTTTGTCACAAAGAAGAT-TACCGAGGGTATCA 7469 || || || ||| | || ||| ||| ||| ||||| | ||| || | ||| | | || Sbjct 83745 CACGAGTCCCCGCGTCGTGGTCGCA-CCTTCGTCACGAGGAAAATCTCGCGA-GCTGTCG 83802 Query 7470 AACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGCGAGAG 7529 | ||| | ||| || |||| | | | | | || ||| | | || | | | Sbjct 83803 CCGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAACTTGGAGGCCAAGCGTG 83862 Query 7530 ATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAG 7589 | ||||| ||||| ||||| || || | ||||||| | ||||| || ||||| Sbjct 83863 ACTGGGGACACGCACGCGACTACGTGGAGGGTATGTGGATGATGCTGCAGCAAGACACCC 83922 Query 7590 CCGACGAATATGTAGTAGCAACGGGTGAGACCCA 7623 ||||||| | ||| | || ||||| || ||||| Sbjct 83923 CCGACGACTTTGTCCTCGCGACGGGCGAAACCCA 83956 >seq84 Length=1022938 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 7232 CGCGTATACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAAC 7291 ||| | ||||| ||||| || |||||| ||| || || ||| || || || || | Sbjct 295747 CGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTCC 295688 Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 7351 ||| ||| ||||||||||| |||||| |||||||||| | || | || ||| Sbjct 295687 GAGACGACTCCCTTCTACCCTCGCTCGCCCTACGGAGTCGCCAAATTGTACGCCTTCTGG 295628 Query 7352 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 7411 ||||||| || ||||||||||| |||| ||| |||||| ||| |||||||||||| Sbjct 295627 ATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAAC 295568 Query 7412 CATGAATCACC 7422 || || || || Sbjct 295567 CACGAGTCCCC 295557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259662641440