Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12- 23] 156 sequences; 39,900,209 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq73 122 3e-22 seq61 122 3e-22 seq88 107 6e-18 >seq73 Length=1807266 Score = 122 bits (134), Expect = 3e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || | || || || ||||| ||||| || || || || | Sbjct 313160 ACCACCACGCAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGC 313101 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || || ||||| || || || || || |||||||| ||||||||||| || || || Sbjct 313100 CAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGGGG 313041 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 |||||||| || ||||| || || || || || || || |||| ||| || | || || Sbjct 313040 GATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTATCGGACGACTCGAC 312981 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCA 140736 || || || | ||||| || || || || || ||||| || |||| Sbjct 312980 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCA 312934 >seq61 Length=3738257 Score = 122 bits (134), Expect = 3e-22 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | || || | || || || ||||| || || || || | Sbjct 597227 TTTGCATACCACCTCGGAGGCGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGT 597168 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| | | || || || || ||||| || || || || ||||| | || ||||| | Sbjct 597167 AATCGGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGT 597108 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || ||||||||||| || || || || || |||| ||| || | Sbjct 597107 CGGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCCTTGACGTTGTCGATCGTATCCGAGG 597048 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || |||| ||||| ||||| || || || ||||| || ||||| Sbjct 597047 ATTCGACCTCGAGCGTAATCGTCTTGCCGGTCAGGGTCTTGACAAAGATTTGCAT 596993 >seq88 Length=4649774 Score = 107 bits (118), Expect = 6e-18 Identities = 150/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 140527 GAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 || |||| || || || ||||| |||||||| || || || | || || || ||||| | Sbjct 184818 GACCAAG-TGGAGGGTCGACTCCTTTTGAATGTTGTAGTCGGCCAAGGTGCGGCCATCCT 184760 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 | || || || || |||||||| ||||||||||| || || || || ||||| || || | Sbjct 184759 CGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTT 184700 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 | || || | ||| || || || |||| || || | || || || || || | |||| Sbjct 184699 GGATCTTGGTTTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCT 184640 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGC 140735 | || || ||||| || || || || ||| Sbjct 184639 TGCCCGTAAGTGTCTTGACGAAGATTTGC 184611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515251371385268