Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12- 23] 156 sequences; 39,900,209 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq61 123 2e-23 seq73 104 2e-17 >seq61 Length=3738257 Score = 123 bits (136), Expect = 2e-23 Identities = 169/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || |||| | ||| | |||||| || ||||| ||| || || || || |||||||| Sbjct 872069 CCACCTCGGAGGCGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 872010 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| |||||||| |||||||| || || | ||||||||||||| ||| Sbjct 872009 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGG 871950 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGT-TTGAGCGTCG-CCACCGTATCGCTCGACTCCA 39235 | | ||| |||| | ||| | | || |||| ||| | | | ||| || |||||| | Sbjct 871949 ATACCCTCCTTGT-CTTGAATCTTGGTCTTGA-CGTTGTCAATCGTGTCCGACGACTCGA 871892 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || | |||||| | || ||||| ||||| || |||||||| ||||||| Sbjct 871891 CCTCGAGCGTGATCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTGCATCT 871841 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || |||| | ||| | |||||| || ||||| ||| || || || || |||||||| Sbjct 597219 CCACCTCGGAGGCGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 597160 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| |||||||| |||||||| || || | ||||||||||||| ||| Sbjct 597159 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGA 597100 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCAC 39236 | || ||| |||||| ||||| |||| ||| | | | |||||| || || || Sbjct 597099 ATGCCCTCCTTGTCCTGAATTTTGGCCTTGA-CGTTGTCGATCGTATCCGAGGATTCGAC 597041 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||| || | || || ||||| || || |||||||||||||| Sbjct 597040 CTCGAGCGTAATCGTCTTGCCGGTCAGGGTCTTGACAAAGATTTGCAT 596993 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || |||| | ||| | |||||| || ||||| ||| || || || || |||||||| Sbjct 596991 CCACCTCGGAGGCGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 596932 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| |||||||| |||||||| || || | ||||||||||||| ||| Sbjct 596931 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGA 596872 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | || ||| |||||| || || |||| ||| | | | |||||| || || || Sbjct 596871 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATCGTATCCGAGGATTCGAC 596813 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || | ||||| | || || ||||| || || ||||| |||||||||| Sbjct 596812 CTCGAGTGTGATCGTCTTGCCGGTCAGGGTCTTGACAAAAATTTGCATCT 596763 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| ||| || || ||||| || ||||| || || || |||| || Sbjct 872280 CACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCGAGCGTGCGACCGTCCTC 872221 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||||||||| || | ||||||||||||| ||| | || ||| || ||| Sbjct 872220 GAGCTGCTTGCCCGCAAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTG 872161 Query 39195 GATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| ||| | | | |||||| || || || || | ||| || | | Sbjct 872160 GATCTTGGCCTTGA-CGTTGTCGATCGTATCCGAGGATTCGACCTCGAGCGTAATCGTCT 872102 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||| || || |||||||||||||| Sbjct 872101 TGCCGGTCAGGGTCTTGACAAAGATTTGCAT 872071 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || |||| | ||| | |||||| || ||||| ||| || || || || |||||||| Sbjct 597675 CCACCTCGGAGGCGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 597616 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| |||||||| |||||||| || || | ||||||||||||| ||| Sbjct 597615 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGA 597556 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | || ||| |||||| || || |||| ||| | | | |||||| || || || Sbjct 597555 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATCGTATCCGAGGATTCGAC 597497 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| | || || |||| || || |||||||||||||| Sbjct 597496 CTCGAGTGTGATCGTCTTGCCGGTCAAGGTCTTGACAAAGATTTGCAT 597449 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || |||| | ||| | |||||| || ||||| ||| || || || || |||||||| Sbjct 597447 CCACCTCGGAGGCGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 597388 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| |||||||| |||||||| || || | ||||||||||||| ||| Sbjct 597387 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGA 597328 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | || ||| |||||| || || |||| ||| | | | ||| || || || || Sbjct 597327 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCTGAGGATTCGAC 597269 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||| || | || || ||||| || || || ||||||||||| Sbjct 597268 CTCGAGCGTAATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 597221 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| ||| || || || || |||||||| || || || |||| || Sbjct 597886 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTC 597827 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| |||||||| || || | ||||||||||||| ||| | || ||| |||||| Sbjct 597826 AAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTG 597767 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || || |||| ||| | | | ||| || || || || || | ||| || | | Sbjct 597766 AATCTTGGCCTTGA-CGTTGTCGATCGTGTCTGAGGATTCGACCTCGAGCGTAATCGTCT 597708 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||| || || || ||||||||||| Sbjct 597707 TGCCGGTCAGGGTCTTGACGAAGATTTGCAT 597677 >seq73 Length=1807266 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | |||||| || || || ||| ||||| || || || ||||| | || || | Sbjct 313148 GCGGAGCACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCC 313089 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || ||||| |||||||| | ||| | | || || Sbjct 313088 ATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGGGGGATTCCTTCCTT 313029 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || |||| ||| | | | ||||||| |||||| || || | |||| Sbjct 313028 GTCCTGGATCTTGGCCTTGA-CGTTGTCGATCGTATCGGACGACTCGACCTCGAGGGTGA 312970 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCA 39283 | | || ||||| || || || ||||||||||||| Sbjct 312969 TGGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCA 312934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429544783326428