Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12- 23] 156 sequences; 39,900,209 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq88 107 1e-18 seq61 107 1e-18 seq73 93.3 3e-14 >seq88 Length=4649774 Score = 107 bits (118), Expect = 1e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 23613 GCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGA 23672 ||| || ||||| || || || ||||| || |||||||| ||||| || || || | || Sbjct 184611 GCAAATCTTCGTCAAGACACTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 184670 Query 23673 CACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731 ||| | || || | ||||| || | | ||||| ||||| | |||||||| || | Sbjct 184671 CACGATCGACAACGTCAAAACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAGACCAGC 184729 Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACA 23791 | ||| | || ||||||||||| || || || || | ||||| || | ||| ||||||| Sbjct 184730 AACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACA 184789 Query 23792 TACAAAAAGAGTCCAC 23807 | ||||| ||||| || Sbjct 184790 TTCAAAAGGAGTCGAC 184805 >seq61 Length=3738257 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || ||||| || |||||||| ||||| || || || || Sbjct 871843 ATGCAGATCTTTGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 871902 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || | || || || | || ||||| || ||| | || || || || Sbjct 871903 GACACGATTGACAACGTCAAGACCAAGA-TTCAAGACAAGGAGGGTATCCCCCCCGACCA 871961 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || || || ||||| || || || |||| ||||| | | ||||||||| Sbjct 871962 GCAGCGATTGATCTTCGCGGGCAAGCAGCTTGAGGACGGCCGCACGCTCGCCGATTACAA 872021 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 872022 CATCCAGAAGGAGTCGAC 872039 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23605 CTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 ||| | ||||| ||||| || || ||||| || || || |||||||| ||||| || || Sbjct 596759 CTTCAGATGCAAATTTTTGTCAAGACCCTGACCGGCAAGACGATCACACTCGAGGTCGAA 596818 Query 23665 TCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724 ||| |||| || | || | | || || ||| ||||| || || | || || Sbjct 596819 TCCTCGGATACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCC 596878 Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784 || || ||||| || || || || ||||| || || || |||| ||||| | | |||| Sbjct 596879 GACCAGCAGCGATTGATCTTCGCGGGCAAGCAGCTTGAGGACGGCCGCACGCTCGCCGAT 596938 Query 23785 TACAACATACAAAAAGAGTCCAC 23807 |||||||| || || ||||| || Sbjct 596939 TACAACATCCAGAAGGAGTCGAC 596961 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||||| || || || ||||| || ||||| || || ||| || Sbjct 596993 ATGCAAATCTTTGTCAAGACCCTGACCGGCAAGACGATTACGCTCGAGGTCGAATCCTCG 597052 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | || |||||| ||||| || || | || || || || Sbjct 597053 GATACGATCGACAACGTCAAGGCCAAAATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 597112 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || || || ||||| || || || |||| ||||| | | |||||||||| Sbjct 597113 CAGCGATTGATCTTCGCGGGCAAGCAGCTTGAGGACGGCCGCACGCTCGCCGATTACAAC 597172 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 597173 ATCCAGAAGGAGTCGAC 597189 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || || || ||||| || ||||| || || ||| | Sbjct 597221 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATTACGCTCGAGGTCGAATCCTCA 597280 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| ||||| || || | || || || || Sbjct 597281 GACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 597340 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || || || ||||| || || || |||| ||||| | | |||||||||| Sbjct 597341 CAGCGATTGATCTTCGCGGGCAAGCAGCTTGAGGACGGCCGCACGCTCGCCGATTACAAC 597400 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 597401 ATCCAGAAGGAGTCGAC 597417 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || || || ||||| || ||||| || || ||| | Sbjct 597677 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATTACGCTCGAGGTCGAATCCTCA 597736 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| ||||| || || | || || || || Sbjct 597737 GACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 597796 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || || || ||||| || || || |||| ||||| | | |||||||||| Sbjct 597797 CAGCGATTGATCTTCGCGGGCAAGCAGCTTGAGGACGGCCGCACGCTCGCCGATTACAAC 597856 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 597857 ATCCAGAAGGAGTCGAC 597873 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||| | || || || |||||||| ||||| || || ||| || Sbjct 597449 ATGCAAATCTTTGTCAAGACCTTGACCGGCAAGACGATCACACTCGAGGTCGAATCCTCG 597508 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | || || ||| ||||| || || | || || || || Sbjct 597509 GATACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 597568 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || || || ||||| || || || |||| ||||| | | |||||||||| Sbjct 597569 CAGCGATTGATCTTCGCGGGCAAGCAGCTTGAGGACGGCCGCACGCTCGCCGATTACAAC 597628 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 597629 ATCCAGAAGGAGTCGAC 597645 >seq73 Length=1807266 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 23612 TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGG 23671 |||| || || || || ||||||||||| || || ||||| ||||| || || || | | Sbjct 312934 TGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 312993 Query 23672 ACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731 | || | || | | || || || ||||| ||||| | || ||||| || | Sbjct 312994 ATACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCAGACCAGC 313053 Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACA 23791 | ||| | || ||||||||||| || || || || | ||||| || | ||| ||||||| Sbjct 313054 AACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACA 313113 Query 23792 TACAAAAAGAGTCCAC 23807 | ||||| ||||| || Sbjct 313114 TCCAAAAGGAGTCGAC 313129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008957359248