Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015485.1_202016-12- 23] 156 sequences; 39,900,209 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq88 154 4e-32 seq73 154 4e-32 seq61 154 4e-32 >seq88 Length=4649774 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || || ||||||||||||||||| || || ||| Sbjct 184612 CAAATCTTCGTCAAGACACTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGAC 184671 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||||||| ||||| || ||||| ||||| ||||| || ||||||||| Sbjct 184672 ACGATCGACAACGTCAAAACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGCAA 184731 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || |||||||| ||||| | || | ||||| || ||| | Sbjct 184732 CGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACATT 184791 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || || || |||| Sbjct 184792 CAAAAGGAGTCGACCCTCCA-CTTG 184815 >seq73 Length=1807266 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || ||||| || || || |||||||||||||| || || || Sbjct 312936 CAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGAT 312995 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| |||||||| ||||||||||| || ||||||||| Sbjct 312996 ACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCAGACCAGCAA 313055 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || |||||||| ||||| | || | ||||| || ||| || Sbjct 313056 CGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACATC 313115 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || || || |||| Sbjct 313116 CAAAAGGAGTCGACCCTCCA-CTTG 313139 >seq61 Length=3738257 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || || ||||| || |||||||| ||| ||||||| Sbjct 597224 CAAATCTTCGTCAAGACCCTGACCGGCAAGACGATTACGCTCGAGGTCGAATCCTCAGAC 597283 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||||||||||| || || || || || |||||||| Sbjct 597284 ACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAG 597343 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| || || ||||| || || || | || || |||||||| ||| || Sbjct 597344 CGATTGATCTTCGCGGGCAAGCAGCTTGAGGACGGCCGCACGCTCGCCGATTACAACATC 597403 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 597404 CAGAAGGAGTCGACGCTGCA-CTTG 597427 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || || ||||| || |||||||| ||| ||||||| Sbjct 597680 CAAATCTTCGTCAAGACCCTGACCGGCAAGACGATTACGCTCGAGGTCGAATCCTCAGAC 597739 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||||||||||| || || || || || |||||||| Sbjct 597740 ACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAG 597799 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| || || ||||| || || || | || || |||||||| ||| || Sbjct 597800 CGATTGATCTTCGCGGGCAAGCAGCTTGAGGACGGCCGCACGCTCGCCGATTACAACATC 597859 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 597860 CAGAAGGAGTCGACGCTGCA-CTTG 597883 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || || || || || |||||||| |||||||| ||| ||| || Sbjct 596768 CAAATTTTTGTCAAGACCCTGACCGGCAAGACGATCACACTCGAGGTCGAATCCTCGGAT 596827 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||||||||||| || || || || || |||||||| Sbjct 596828 ACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAG 596887 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| || || ||||| || || || | || || |||||||| ||| || Sbjct 596888 CGATTGATCTTCGCGGGCAAGCAGCTTGAGGACGGCCGCACGCTCGCCGATTACAACATC 596947 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 596948 CAGAAGGAGTCGACGCTGCA-CTTG 596971 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || || || |||||||| |||||||| ||| ||| || Sbjct 597452 CAAATCTTTGTCAAGACCTTGACCGGCAAGACGATCACACTCGAGGTCGAATCCTCGGAT 597511 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||||||||||| || || || || || |||||||| Sbjct 597512 ACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAG 597571 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| || || ||||| || || || | || || |||||||| ||| || Sbjct 597572 CGATTGATCTTCGCGGGCAAGCAGCTTGAGGACGGCCGCACGCTCGCCGATTACAACATC 597631 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 597632 CAGAAGGAGTCGACGCTGCA-CTTG 597655 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || || || ||||| || |||||||| ||| ||| || Sbjct 596996 CAAATCTTTGTCAAGACCCTGACCGGCAAGACGATTACGCTCGAGGTCGAATCCTCGGAT 597055 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| || ||||||||||| || || || || || |||||||| Sbjct 597056 ACGATCGACAACGTCAAGGCCAAAATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAG 597115 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| || || ||||| || || || | || || |||||||| ||| || Sbjct 597116 CGATTGATCTTCGCGGGCAAGCAGCTTGAGGACGGCCGCACGCTCGCCGATTACAACATC 597175 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 597176 CAGAAGGAGTCGACGCTGCA-CTTG 597199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203728794042264