Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015495.1_202016-12-
23] 225 sequences; 40,892,155 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq91 87.8 2e-12
seq90 84.2 2e-11
>seq91
Length=2005964
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| || || || || |||||||||||| | |||| ||| || || || || ||
Sbjct 618744 GTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCC 618685
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
|| |||||| || ||||| ||||| || ||||| || ||||| ||| || ||
Sbjct 618684 GCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 618625
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | ||| |||| || ||| || || | || | ||||||||||||||| ||
Sbjct 618624 ACGTTGTCGATCGTATCCGAGGATTCGACCTCGAGTGTGATCGTCTTGCCGGTCAAGGTC 618565
Query 143168 TTTACGAATATTTGCATA 143185
|| || || |||||||||
Sbjct 618564 TTGACAAAGATTTGCATA 618547
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| || || || || |||||||||||| | |||| ||| || || || || ||
Sbjct 619200 GTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCC 619141
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
|| |||||| || ||||| ||||| || ||||| || ||||| |||||| ||
Sbjct 619140 GCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCCTTG 619081
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | ||| |||| || ||| || || | || | |||||||||||||| ||
Sbjct 619080 ACGTTGTCGATCGTATCCGAGGATTCGACCTCGAGCGTAATCGTCTTGCCGGTCAGGGTC 619021
Query 143168 TTTACGAATATTTGCATA 143185
|| || || |||||||||
Sbjct 619020 TTGACAAAGATTTGCATA 619003
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| || || || || |||||||||||| | |||| ||| || || || || ||
Sbjct 619428 GTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCC 619369
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
|| |||||| || ||||| ||||| || ||||| || ||||| ||| || ||
Sbjct 619368 GCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 619309
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | ||| |||| || ||| || || | || | ||||||||||||||| ||
Sbjct 619308 ACGTTGTCGATCGTATCCGAGGATTCGACCTCGAGGGTGATCGTCTTGCCGGTCAAGGTC 619249
Query 143168 TTTACGAATATTTGCATA 143185
|| || || |||||||||
Sbjct 619248 TTGACAAAGATTTGCATA 619231
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| || || || || |||||||||||| | |||| ||| || || || || ||
Sbjct 619884 GTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCC 619825
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
|| |||||| || ||||| ||||| || ||||| || ||||| ||| || ||
Sbjct 619824 GCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 619765
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | ||| |||| || ||| || || | || | ||||||||||||||| ||
Sbjct 619764 ACGTTGTCGATCGTATCCGAGGATTCGACCTCGAGTGTGATCGTCTTGCCGGTCAAGGTC 619705
Query 143168 TTTACGAATATTTGCATA 143185
|| || || |||||||||
Sbjct 619704 TTGACAAAGATTTGCATA 619687
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| || || || || |||||||||||| | |||| ||| || || || || ||
Sbjct 620112 GTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCC 620053
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
|| |||||| || ||||| ||||| || ||||| || ||||| ||| || ||
Sbjct 620052 GCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 619993
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | ||| |||| || ||| || || | || | ||||||||||||||| ||
Sbjct 619992 ACGTTGTCGATCGTATCCGAGGATTCGACCTCGAGTGTGATCGTCTTGCCGGTCAAGGTC 619933
Query 143168 TTTACGAATATTTGCATA 143185
|| || || |||||||||
Sbjct 619932 TTGACAAAGATTTGCATA 619915
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| || || || || |||||||||||| | |||| ||| || || || || ||
Sbjct 620568 GTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCC 620509
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
|| |||||| || ||||| ||||| || ||||| || ||||| ||| || ||
Sbjct 620508 GCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 620449
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | ||| |||| || ||| || || | || | ||||||||||||||| ||
Sbjct 620448 ACGTTGTCGATCGTATCCGAGGATTCGACCTCGAGTGTGATCGTCTTGCCGGTCAAGGTC 620389
Query 143168 TTTACGAATATTTGCATA 143185
|| || || |||||||||
Sbjct 620388 TTGACAAAGATTTGCATA 620371
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014
|| || ||||| | ||| | || || || | || || || || || ||||||||||||
Sbjct 620829 TGTCCCCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCG 620770
Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074
| |||| ||| || || || || || || |||||| || ||||| |||||
Sbjct 620769 GCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGG 620710
Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134
|| ||||| || ||||| || || || | | || | |||||| | || |||
Sbjct 620709 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCTGAGGATTCG 620650
Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| || | || | |||||||||||||| || || ||||| |||||||||
Sbjct 620649 ACCTCGAGCGTAATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCATA 620599
Score = 82.4 bits (90), Expect = 8e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| || || || || |||||||||||| | |||| ||| || || || || ||
Sbjct 618516 GTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCC 618457
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
|| |||||| || ||||| ||||| || ||||| || ||||| || || ||
Sbjct 618456 GCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 618397
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | |||||| | || ||| || || | || | ||||||||||||||| ||
Sbjct 618396 ACGTTGTCGATCGTGTCTGAGGATTCGACCTCGAGCGTAATCGTCTTGCCGGTCAAGGTC 618337
Query 143168 TTTACGAATATTTGCATA 143185
|| || || |||||||||
Sbjct 618336 TTGACAAAGATTTGCATA 618319
>seq90
Length=1083821
Score = 84.2 bits (92), Expect = 2e-11
Identities = 154/226 (68%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
||| ||||| | || | || || || | || || || ||||| |||||||| |||
Sbjct 178237 GCCACCTCGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGC 178178
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
|| |||| || ||||| || || || || |||| ||||||||||| || || ||
Sbjct 178177 CAAGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGCGG 178118
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|||||||| ||||| || || ||| | | || | |||||| | | || ||
Sbjct 178117 GATGCCTTCCTTGTCTTGGATCTTGGTTTTGACGTTGTCGATCGTGTCGGACGACTCGAC 178058
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGC 143182
|| | || | ||||||||| || | ||| || ||||| ||||||
Sbjct 178057 CTCGAGGGTGATCGTCTTGCCCGTAAGTGTCTTGACGAAGATTTGC 178012
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507012974022000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |