Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015495.1_202016-12- 23] 225 sequences; 40,892,155 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq91 87.8 2e-12 seq90 84.2 2e-11 >seq91 Length=2005964 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||||||| | |||| ||| || || || || || Sbjct 618744 GTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCC 618685 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||||| || ||||| ||||| || ||||| || ||||| ||| || || Sbjct 618684 GCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 618625 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||| |||| || ||| || || | || | ||||||||||||||| || Sbjct 618624 ACGTTGTCGATCGTATCCGAGGATTCGACCTCGAGTGTGATCGTCTTGCCGGTCAAGGTC 618565 Query 143168 TTTACGAATATTTGCATA 143185 || || || ||||||||| Sbjct 618564 TTGACAAAGATTTGCATA 618547 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||||||| | |||| ||| || || || || || Sbjct 619200 GTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCC 619141 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||||| || ||||| ||||| || ||||| || ||||| |||||| || Sbjct 619140 GCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCCTTG 619081 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||| |||| || ||| || || | || | |||||||||||||| || Sbjct 619080 ACGTTGTCGATCGTATCCGAGGATTCGACCTCGAGCGTAATCGTCTTGCCGGTCAGGGTC 619021 Query 143168 TTTACGAATATTTGCATA 143185 || || || ||||||||| Sbjct 619020 TTGACAAAGATTTGCATA 619003 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||||||| | |||| ||| || || || || || Sbjct 619428 GTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCC 619369 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||||| || ||||| ||||| || ||||| || ||||| ||| || || Sbjct 619368 GCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 619309 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||| |||| || ||| || || | || | ||||||||||||||| || Sbjct 619308 ACGTTGTCGATCGTATCCGAGGATTCGACCTCGAGGGTGATCGTCTTGCCGGTCAAGGTC 619249 Query 143168 TTTACGAATATTTGCATA 143185 || || || ||||||||| Sbjct 619248 TTGACAAAGATTTGCATA 619231 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||||||| | |||| ||| || || || || || Sbjct 619884 GTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCC 619825 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||||| || ||||| ||||| || ||||| || ||||| ||| || || Sbjct 619824 GCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 619765 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||| |||| || ||| || || | || | ||||||||||||||| || Sbjct 619764 ACGTTGTCGATCGTATCCGAGGATTCGACCTCGAGTGTGATCGTCTTGCCGGTCAAGGTC 619705 Query 143168 TTTACGAATATTTGCATA 143185 || || || ||||||||| Sbjct 619704 TTGACAAAGATTTGCATA 619687 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||||||| | |||| ||| || || || || || Sbjct 620112 GTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCC 620053 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||||| || ||||| ||||| || ||||| || ||||| ||| || || Sbjct 620052 GCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 619993 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||| |||| || ||| || || | || | ||||||||||||||| || Sbjct 619992 ACGTTGTCGATCGTATCCGAGGATTCGACCTCGAGTGTGATCGTCTTGCCGGTCAAGGTC 619933 Query 143168 TTTACGAATATTTGCATA 143185 || || || ||||||||| Sbjct 619932 TTGACAAAGATTTGCATA 619915 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||||||| | |||| ||| || || || || || Sbjct 620568 GTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCC 620509 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||||| || ||||| ||||| || ||||| || ||||| ||| || || Sbjct 620508 GCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 620449 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||| |||| || ||| || || | || | ||||||||||||||| || Sbjct 620448 ACGTTGTCGATCGTATCCGAGGATTCGACCTCGAGTGTGATCGTCTTGCCGGTCAAGGTC 620389 Query 143168 TTTACGAATATTTGCATA 143185 || || || ||||||||| Sbjct 620388 TTGACAAAGATTTGCATA 620371 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || || ||||| | ||| | || || || | || || || || || |||||||||||| Sbjct 620829 TGTCCCCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCG 620770 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 | |||| ||| || || || || || || |||||| || ||||| ||||| Sbjct 620769 GCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCGGGG 620710 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || ||||| || ||||| || || || | | || | |||||| | || ||| Sbjct 620709 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCTGAGGATTCG 620650 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | || | |||||||||||||| || || ||||| ||||||||| Sbjct 620649 ACCTCGAGCGTAATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCATA 620599 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||||||| | |||| ||| || || || || || Sbjct 618516 GTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCC 618457 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||||| || ||||| ||||| || ||||| || ||||| || || || Sbjct 618456 GCGAAGATCAATCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 618397 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| | || ||| || || | || | ||||||||||||||| || Sbjct 618396 ACGTTGTCGATCGTGTCTGAGGATTCGACCTCGAGCGTAATCGTCTTGCCGGTCAAGGTC 618337 Query 143168 TTTACGAATATTTGCATA 143185 || || || ||||||||| Sbjct 618336 TTGACAAAGATTTGCATA 618319 >seq90 Length=1083821 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| ||||| | || | || || || | || || || ||||| |||||||| ||| Sbjct 178237 GCCACCTCGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGC 178178 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| || ||||| || || || || |||| ||||||||||| || || || Sbjct 178177 CAAGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGCGG 178118 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| || || ||| | | || | |||||| | | || || Sbjct 178117 GATGCCTTCCTTGTCTTGGATCTTGGTTTTGACGTTGTCGATCGTGTCGGACGACTCGAC 178058 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGC 143182 || | || | ||||||||| || | ||| || ||||| |||||| Sbjct 178057 CTCGAGGGTGATCGTCTTGCCCGTAAGTGTCTTGACGAAGATTTGC 178012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507012974022000