Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015495.1_202016-12-
23] 225 sequences; 40,892,155 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq79 172 9e-39
seq77 168 1e-37
seq107 154 2e-33
>seq79
Length=1382791
Score = 172 bits (190), Expect = 9e-39
Identities = 158/200 (79%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || |||||||| || ||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 374734 CGCGACAACATCCAGGGTATCACCAAGCCCGCTATCCGCCGTCTCGCTCGTCGTGGTGGT 374793
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| |||| || ||| |||| ||||||| ||| | ||| | ||||||||||||
Sbjct 374794 GTCAAGCGTATCTCCGGCTTGATCTACGAAGAGACTCGAGGTGTCCTCAAGATCTTCCTC 374853
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| |||| ||| | || ||| || |||||||| || || ||||| |||||
Sbjct 374854 GAGAACGTCATCCGTGACTCGGTCACCTACACAGAGCACGCCAAGCGCAAGACCGTCACT 374913
Query 16637 TCCATGGATATCGTCTATGC 16656
|| | ||| | ||||| ||
Sbjct 374914 TCGCTCGATGTGGTCTACGC 374933
>seq77
Length=440787
Score = 168 bits (186), Expect = 1e-37
Identities = 179/236 (76%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || |||||||| || ||||||||||| || || || ||||| || |||||||||||
Sbjct 226725 CGTGACAACATCCAGGGTATCACCAAGCCCGCCATTCGCCGTCTCGCACGTCGTGGTGGT 226784
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
|| |||||| |||| || || |||| ||||||| |||| ||| | ||||||||||||
Sbjct 226785 GTGAAGCGTATCTCGGGCCTGATCTACGAAGAGACCCGTGGTGTGCTCAAGATCTTCCTC 226844
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| |||| ||| | || ||| ||||||||||| || || ||||| ||||||
Sbjct 226845 GAGAACGTGATCCGTGACTCGGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACC 226904
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| | ||| ||||||| || |||| || ||||| | | | || ||||| ||
Sbjct 226905 TCGCTCGATGTCGTCTACGCCCTGAAGCGATCCGGCCGAACGCTCTACGGTTTCGG 226960
Score = 165 bits (182), Expect = 1e-36
Identities = 178/236 (75%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || |||||||| || ||||||||||| || || || ||||| || |||||||||||
Sbjct 317530 CGTGACAACATCCAGGGTATCACCAAGCCCGCCATTCGCCGTCTCGCACGTCGTGGTGGT 317471
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
|| |||||| |||| || || |||| ||||||| |||| ||| | ||||||||||||
Sbjct 317470 GTGAAGCGTATCTCGGGCCTGATCTACGAAGAGACCCGTGGTGTGCTCAAGATCTTCCTC 317411
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| |||| ||| | || ||| ||||||||||| || || ||||| ||||||
Sbjct 317410 GAGAACGTGATCCGTGACTCGGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACC 317351
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| | ||| ||||||| || | || || ||||| | | | || ||||| ||
Sbjct 317350 TCGCTCGATGTCGTCTACGCCCTAAAGCGATCCGGCCGAACGCTCTACGGTTTCGG 317295
>seq107
Length=2788206
Score = 154 bits (170), Expect = 2e-33
Identities = 154/200 (77%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| ||||||||||| || ||||||||||| || || || ||||| || |||||||||||
Sbjct 2202794 CGTGATAACATCCAGGGTATCACCAAGCCCGCCATTCGCCGTCTCGCGCGTCGTGGTGGT 2202735
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| |||| || | |||| || |||| ||| | ||| | ||||||||||||
Sbjct 2202734 GTCAAGCGTATCTCGGGCCTCATCTACGAGGAGACTCGAGGTGTGCTCAAGATCTTCCTC 2202675
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| |||||||| ||| | || ||| ||||| ||||| || || ||||| ||||||
Sbjct 2202674 GAGAACGTTATCCGTGACTCGGTCACCTACACCGAACACGCCAAGCGCAAGACGGTCACC 2202615
Query 16637 TCCATGGATATCGTCTATGC 16656
|| | || | ||||| ||
Sbjct 2202614 TCGCTCGACGTTGTCTACGC 2202595
Score = 154 bits (170), Expect = 2e-33
Identities = 154/200 (77%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| ||||||||||| || ||||||||||| || || || ||||| || |||||||||||
Sbjct 2251574 CGTGATAACATCCAGGGTATCACCAAGCCCGCCATTCGCCGTCTCGCGCGTCGTGGTGGT 2251633
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| |||| || | |||| || |||| ||| | ||| | ||||||||||||
Sbjct 2251634 GTCAAGCGTATCTCGGGCCTCATCTACGAGGAGACTCGAGGTGTGCTCAAGATCTTCCTC 2251693
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| |||||||| ||| | || ||| ||||| ||||| || || ||||| ||||||
Sbjct 2251694 GAGAACGTTATCCGTGACTCGGTCACCTACACCGAACACGCCAAGCGCAAGACGGTCACC 2251753
Query 16637 TCCATGGATATCGTCTATGC 16656
|| | || | ||||| ||
Sbjct 2251754 TCGCTCGACGTTGTCTACGC 2251773
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074994280925
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |