Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015495.1_202016-12- 23] 225 sequences; 40,892,155 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq79 172 9e-39 seq77 168 1e-37 seq107 154 2e-33 >seq79 Length=1382791 Score = 172 bits (190), Expect = 9e-39 Identities = 158/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||||||||| |||||||| ||||| |||||||||||||| Sbjct 374734 CGCGACAACATCCAGGGTATCACCAAGCCCGCTATCCGCCGTCTCGCTCGTCGTGGTGGT 374793 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| |||| || ||| |||| ||||||| ||| | ||| | |||||||||||| Sbjct 374794 GTCAAGCGTATCTCCGGCTTGATCTACGAAGAGACTCGAGGTGTCCTCAAGATCTTCCTC 374853 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| ||| | || ||| || |||||||| || || ||||| ||||| Sbjct 374854 GAGAACGTCATCCGTGACTCGGTCACCTACACAGAGCACGCCAAGCGCAAGACCGTCACT 374913 Query 16637 TCCATGGATATCGTCTATGC 16656 || | ||| | ||||| || Sbjct 374914 TCGCTCGATGTGGTCTACGC 374933 >seq77 Length=440787 Score = 168 bits (186), Expect = 1e-37 Identities = 179/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||||||||| || || || ||||| || ||||||||||| Sbjct 226725 CGTGACAACATCCAGGGTATCACCAAGCCCGCCATTCGCCGTCTCGCACGTCGTGGTGGT 226784 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| |||| || || |||| ||||||| |||| ||| | |||||||||||| Sbjct 226785 GTGAAGCGTATCTCGGGCCTGATCTACGAAGAGACCCGTGGTGTGCTCAAGATCTTCCTC 226844 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| ||| | || ||| ||||||||||| || || ||||| |||||| Sbjct 226845 GAGAACGTGATCCGTGACTCGGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACC 226904 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||| ||||||| || |||| || ||||| | | | || ||||| || Sbjct 226905 TCGCTCGATGTCGTCTACGCCCTGAAGCGATCCGGCCGAACGCTCTACGGTTTCGG 226960 Score = 165 bits (182), Expect = 1e-36 Identities = 178/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||||||||| || || || ||||| || ||||||||||| Sbjct 317530 CGTGACAACATCCAGGGTATCACCAAGCCCGCCATTCGCCGTCTCGCACGTCGTGGTGGT 317471 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| |||| || || |||| ||||||| |||| ||| | |||||||||||| Sbjct 317470 GTGAAGCGTATCTCGGGCCTGATCTACGAAGAGACCCGTGGTGTGCTCAAGATCTTCCTC 317411 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| ||| | || ||| ||||||||||| || || ||||| |||||| Sbjct 317410 GAGAACGTGATCCGTGACTCGGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACC 317351 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||| ||||||| || | || || ||||| | | | || ||||| || Sbjct 317350 TCGCTCGATGTCGTCTACGCCCTAAAGCGATCCGGCCGAACGCTCTACGGTTTCGG 317295 >seq107 Length=2788206 Score = 154 bits (170), Expect = 2e-33 Identities = 154/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||||||||| || || || ||||| || ||||||||||| Sbjct 2202794 CGTGATAACATCCAGGGTATCACCAAGCCCGCCATTCGCCGTCTCGCGCGTCGTGGTGGT 2202735 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| |||| || | |||| || |||| ||| | ||| | |||||||||||| Sbjct 2202734 GTCAAGCGTATCTCGGGCCTCATCTACGAGGAGACTCGAGGTGTGCTCAAGATCTTCCTC 2202675 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| |||||||| ||| | || ||| ||||| ||||| || || ||||| |||||| Sbjct 2202674 GAGAACGTTATCCGTGACTCGGTCACCTACACCGAACACGCCAAGCGCAAGACGGTCACC 2202615 Query 16637 TCCATGGATATCGTCTATGC 16656 || | || | ||||| || Sbjct 2202614 TCGCTCGACGTTGTCTACGC 2202595 Score = 154 bits (170), Expect = 2e-33 Identities = 154/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||||||||| || || || ||||| || ||||||||||| Sbjct 2251574 CGTGATAACATCCAGGGTATCACCAAGCCCGCCATTCGCCGTCTCGCGCGTCGTGGTGGT 2251633 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| |||| || | |||| || |||| ||| | ||| | |||||||||||| Sbjct 2251634 GTCAAGCGTATCTCGGGCCTCATCTACGAGGAGACTCGAGGTGTGCTCAAGATCTTCCTC 2251693 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| |||||||| ||| | || ||| ||||| ||||| || || ||||| |||||| Sbjct 2251694 GAGAACGTTATCCGTGACTCGGTCACCTACACCGAACACGCCAAGCGCAAGACGGTCACC 2251753 Query 16637 TCCATGGATATCGTCTATGC 16656 || | || | ||||| || Sbjct 2251754 TCGCTCGACGTTGTCTACGC 2251773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074994280925