Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015495.1_202016-12- 23] 225 sequences; 40,892,155 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq100 123 5e-23 seq79 93.3 9e-14 seq63 87.8 4e-12 >seq100 Length=649876 Score = 123 bits (136), Expect = 5e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 ||| || |||| ||||| ||||| ||||| || ||||| ||||| || |||| |||||| Sbjct 357926 GGTATCGTTGGCCCCAACGGTGCCGGTAAATCGACCCTGATCAAGCTCTTGACGGGCGAG 357867 Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 ||| | || || || ||| |||||| || ||| |||| | || ||||| ||| Sbjct 357866 ACCGTGCCCGACGAAGGCAAGGTTGAGAAGCACCCTAACTTGCGTGTCGCGTACGTGGCT 357807 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 || ||||| ||||||||||||||| | ||||| || | ||| | | || ||||| ||| Sbjct 357806 CAACACGCGTTCCACCACATCGAGGAACACCTTGAGAAGACGGCGATGCAGTACATCCAG 357747 Query 280350 TGGCGCTA 280357 ||||| || Sbjct 357746 TGGCGTTA 357739 >seq79 Length=1382791 Score = 93.3 bits (102), Expect = 9e-14 Identities = 234/356 (66%), Gaps = 0/356 (0%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 || || ||| |||||||| | || || |||||| | || | ||||||||||||| Sbjct 732753 GATTTTATCAACAAGGAGTTGATCCTCTTCTCGATGGCCGACAACGTGCGTTCTATTCCC 732694 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 || | ||||| |||| || || || ||| || | || | |||||||| Sbjct 732693 TCTGTCATTGATGGGTTCAAACCGGGTCAACGCAAGGTCTTGTTCGGTTGCTTCAAGCGC 732634 Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697 || ||| ||||| || ||||||| || || ||||| || |||| || | Sbjct 732633 AAGCTGACGCAAGAGATCAAGGTCGGACAATTGGGCGGTTACGTCGCCGAGCACTCGGCG 732574 Query 218698 TACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTG 218757 |||||||||||||| |||| |||| || |||| | ||| |||| || | | || Sbjct 732573 TACCATCACGGTGAAATGAGTTTGCAAGGCACCATCATCGGCCTGGCGCAACAGTTCGTC 732514 Query 218758 GGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGT 218817 || |||||| | ||| | || ||| |||||||| ||||| ||||||| ||| Sbjct 732513 GGGTCCAACAACCTCAACGTTCTCGACCCGAACGGTCAATTTGGCACTCGTCTGCAAGGT 732454 Query 218818 GGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCG 218873 || || || ||||| || | || ||||| || || | || || | ||||| Sbjct 732453 GGTAAAGACGCGGCTTCGGCTCGTTACATCTTCACGAACGTATCATCCATCACGCG 732398 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| ||||||||||||||||||||| | ||||||||||| || |||| |||||||||| Sbjct 564852 GCCTGGTTAGCTCAGTCGGTAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 564793 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 564792 CCCGCATCGGGC 564781 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| ||||||||||||||||||||| | ||||||||||| || |||| |||||||||| Sbjct 581107 GCCTGGTTAGCTCAGTCGGTAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 581166 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 581167 CCCGCATCGGGC 581178 Score = 87.8 bits (96), Expect = 4e-12 Identities = 249/373 (67%), Gaps = 10/373 (3%) Strand=Plus/Minus Query 217744 CTCAAGAAGACCGATGGCGTCAAGAAGACTCGTCTCACGGGCATCAAGAAGCTCACGGAC 217803 ||||||||||| || || |||| | ||| ||||||| || |||||| || Sbjct 733530 CTCAAGAAGACGGACGGACACAAGCGATCGCGTATCACGGGTCTCGTTAAGCTCGAAGAT 733471 Query 217804 GCTGCAT-GGGCTGGCACCAAAAACTCTGGTC--TCTGCACTCTCATCCTGACAGAGGGA 217860 || | || ||||| || | || | |||| ||||| |||||| |||| || ||| Sbjct 733470 GC-GAATAACGCTGGTACGAGGAA--CGGGTCCAAGTGCACGCTCATCTTGACCGAAGGA 733414 Query 217861 GACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCCGTGGTGGGTCGTGAAAGGTATGGT 217920 || || || |||| || | | ||||| || || || ||||| || | |||||| Sbjct 733413 GATTCCGCCAAGGCGCTTGCCGTCTCGGGTCTGGCTGTCGTCGGTCGAGACAACTATGGT 733354 Query 217921 ATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGCGATGCCTCGGTTTCAAGCATTGCT 217980 ||||||| | || || ||| |||||||||| || || || ||| |||| | || Sbjct 733353 GTCTTCCCTTTGCGAGGAAAGTTGCTCAACGTACGTGAAGCGGCGG-GCAAAGCCCTTCT 733295 Query 217981 -GCAAATGCAGAGATTGCCGCCATCAAGCAAATCCTGGGTCTTCAGGTTGGAAAGACTTA 218039 | ||||| |||||| || |||||||| ||| ||||||| ||| || || ||| Sbjct 733294 CGACAATGCCGAGATTCAAGCGATCAAGCAGATCTTGGGTCTGCAGCAGGGCAAAGTTTA 733235 Query 218040 CAAGGATG-CGTCATCTCTGCGTTATGGCTCTGTCATGCTTATGACTGATGCTGATGTTG 218098 || || | || | || || ||||| ||| ||||| | ||| | ||| ||| | Sbjct 733234 CACCGACGTCGAC-TCGCTCCGTTACGGCAAGCTCATGATCATGGCCGATCAAGATCACG 733176 Query 218099 ACGGGTCCCACAT 218111 | || || ||||| Sbjct 733175 ATGGATCGCACAT 733163 >seq63 Length=964923 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || ||||| ||||| |||||||||||||| || | | || ||||| || | Sbjct 908688 GGCTCGCTGTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCCATCCTGTTCGAG 908747 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| | || |||| || ||||| || |||||| ||||| ||||| |||||| Sbjct 908748 GCCGATATTCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTTAACGTCGCCTGG 908807 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | | ||||| || |||| || | ||| |||| ||||| |||||||| Sbjct 908808 CTCGAGAATTACCTCACGTCGCTGACGACGTGCACGTCCATCATCGTCTCGCACGACTCG 908867 Query 279879 GGCTTCCT 279886 |||||||| Sbjct 908868 GGCTTCCT 908875 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || ||||| ||||| |||||||||||||| || | | || ||||| || | Sbjct 915141 GGCTCGCTGTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCCATCCTGTTCGAG 915082 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| | || |||| || ||||| || |||||| ||||| ||||| |||||| Sbjct 915081 GCCGATATTCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTTAACGTCGCCTGG 915022 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | | ||||| || |||| || | ||| |||| ||||| |||||||| Sbjct 915021 CTCGAGAATTACCTCACGTCGCTGACGACGTGCACGTCCATCATCGTCTCGCACGACTCG 914962 Query 279879 GGCTTCCT 279886 |||||||| Sbjct 914961 GGCTTCCT 914954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027833836939225