Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015495.1_202016-12- 23] 225 sequences; 40,892,155 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq119 316 4e-81 seq143 120 6e-22 >seq119 Length=1057158 Score = 316 bits (350), Expect = 4e-81 Identities = 812/1222 (66%), Gaps = 32/1222 (3%) Strand=Plus/Minus Query 244397 GCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTG 244456 ||||||| |||||||||||||||||| |||||| | | ||| |||| | | | Sbjct 673409 GCGGCGTGGTAGATGGTCTCGAAGATTTGCTTGTTGAGCTTGCGCGCCTCGGGCGAATCG 673350 Query 244457 AAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGT 244516 || || || ||| |||||| ||||||| || || ||||| |||||||||||||| Sbjct 673349 AACGGCATCGCCAAGGCCATGAACGCGTCGGCAAGACCTTGCACTCCGATGCCGATGGGG 673290 Query 244517 CTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACC 244576 | ||| || ||| || | || ||| ||||| || |||| ||| ||| | Sbjct 673289 CGGTGGCGGAGGTTAGAATTCTGTGCCTCGATGACGGGATAGTAGTTAACGTTGATGATG 673230 Query 244577 TTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCG 244636 ||| | |||| | || | | |||| ||| || | || || |||||| || Sbjct 673229 CGGTTCAAGTTGAAAGCGACGACCTTGGCGACCTCGTGCAACTTCTTGAAATCGTACACG 673170 Query 244637 TAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTG 244696 | | || || ||| ||| ||| || | ||| ||||| ||| Sbjct 673169 CCG---TTCT------TGATGAAGCTCGGCAACGCGAT-----CGA----GGCCAAATTG 673128 Query 244697 CAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCAC 244756 |||||||| ||| || | | ||||| | ||||||||||| ||||| | || Sbjct 673127 CAGACGGCGCACTCATCGGGCGCCGAGTACTCAATGATCTCGGTGCACAGGTTCGAGGAC 673068 Query 244757 TTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 ||||| ||||| |||| || || || || || ||| ||||||||||||||||||| Sbjct 673067 TTGATCGTGCCAAGGTTCTTTTGGTTAGATTTCTTGTTTGCGGCGTCCTTGTAGAGCATG 673008 Query 244817 AAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTCCCTAGCCTT 244875 || || ||||| |||| |||||| ||| | ||| || ||| || | || Sbjct 673007 AACGGGTTGCCGGTTTCGACCTGGGCTTGGAGAATCGC-GTACCAAAGCTTTTGCGCGGG 672949 Query 244876 GACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGG 244935 || |||||| || ||||| ||||| | ||||||| |||||| Sbjct 672948 GATCGTCCTCTTGGCGCGACCCTCCTTTTCGTATTTCTCGAACAGGGCGCGGAACTCTTC 672889 Query 244936 GCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCC 244995 | | |||| |||| ||||||||| || ||||| | |||| |||||| ||| | Sbjct 672888 GTCATAGACTTCGTGGAGGCCGGGGGCTTCGGCAGGGCAGAAGAGAGGCCACTCACCGGC 672829 Query 244996 GTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGT 245055 | ||| ||| | || ||| ||||| |||||||||||||| || |||||| || | | Sbjct 672828 GGCCTCGACACGCTCCATAAAGAGATCGGGGATCCAGAGCGCAAAGAAGAGATCACGAGC 672769 Query 245056 CCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTG 245115 | || ||| ||| |||||| | || |||| || || |||| ||| |||| Sbjct 672768 GCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAACTCGAAGATGTCAGCGTG 672709 Query 245116 CCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCAT 245175 ||| ||||| | ||||| |||| ||| ||||| ||||||||||| || ||||| || Sbjct 672708 CCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTTGGTCGACGTA 672649 Query 245176 CCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGT 245235 | | || |||| ||| || || | || || |||||||| |||| |||||| || Sbjct 672648 GCGCGCGGTGTTGTTGTAGACACGGAGCATGGGAACGATGCCGTTCGAGTAGCCGTTCGT 672589 Query 245236 GCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGC 245295 || |||||||| ||| | | | || |||| ||| || || | || ||||| Sbjct 672588 ACCGGCGATGTAGGAGCCAGTCGCGCGGATGTTGTGAATGCTCAAACCGATACCACCGGC 672529 Query 245296 GTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGA 245355 | |||||| ||||| ||||| |||||| ||||| ||||| || || || Sbjct 672528 GGTCTTGGAAATGAGCGCGCAAGTCTTGAGCGTGTCGTAGATGCCTTCAATCGAATCGTC 672469 Query 245356 CTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAG 245415 |||||| ||| ||| || ||||| || ||||| || | || | | | ||| || || Sbjct 672468 CTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCGGCGTTAAAGAG 672409 Query 245416 AGTGGGGCTGGCGTGGGTAAAGTAGCGGCTC-GAGAGGAACCCGTACGTCTGGAGCAGA- 245473 || || ||||||||||||||||| |||| || | || ||||| || | ||| Sbjct 672408 CGTCGGCGAGGCGTGGGTAAAGTAGC-GCTCGGACATGAGGTTGTACGACTCCA--AGAC 672352 Query 245474 GCG-TCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTG-GGGCG 245531 ||| ||||||| || |||||||| | |||| | |||||| ||||||| ||||| Sbjct 672351 GCGCTCGATGTCGTGACCGTGGATGCCGATGGCGACACGCATGAGCATGTGCTGCGGGCG 672292 Query 245532 TCTCGATGGGTCCCTCGGGTCCCT--TGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCC 245589 | ||| | | || | ||| | |||| |||||||||||||||||| ||||| || Sbjct 672291 T-TCG--GCGACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGCTCGAGCGTTTTGAAGCC 672235 Query 245590 AAAGTACGAGTAGCCAAAGTCG 245611 |||||| ||| ||||| ||| Sbjct 672234 AAAGTAGTTGTAACCAAAATCG 672213 >seq143 Length=1035691 Score = 120 bits (132), Expect = 6e-22 Identities = 188/263 (71%), Gaps = 11/263 (4%) Strand=Plus/Plus Query 42744 GGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTC 42803 ||| | || || |||||||||||||||||| || | | |||||||||| | |||||| Sbjct 144705 GGCTCGTTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGCTTGATGCCCGGATTGACCTTC 144764 Query 42804 TCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 || ||||| |||||| | |||||||| || || | |||||||| ||||| ||||| Sbjct 144765 TCCAACGAGCTCATCTCGCGTGACGAGGGCCTCCACACCGACTTTGCTTGCCTTTTGTTC 144824 Query 42864 TCGAGCCACCTCAGGCACAAGCCCTC-GAAGGAGCGGGTCCGGGCCATCATCACGGAGGC 42922 || ||||||| || ||| |||| || ||| | |||||||| |||||| Sbjct 144825 TC---CCACCTCGAGC-GAAGACCTCACCCAGATACCGTCGCGCTCATCATCAAGGAGGC 144880 Query 42923 CGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC---CGTGTCCCTGGTCGGCAT 42979 ||| || ||||||||||| ||| | || || | || || || || || |||| || Sbjct 144881 CGTCGAAATCGAGAAGGAATTCTTGACCGAGGCTCTTCCTTGCG-GT--TTGATCGGTAT 144937 Query 42980 GAACCACGACCTCATGTGCAAGT 43002 ||| | | ||||||||| ||| Sbjct 144938 GAATGCCAAGCTCATGTGCCAGT 144960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944336544046000