Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015495.1_202016-12-
23] 225 sequences; 40,892,155 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq197 107 4e-18
seq100 86.0 1e-11
>seq197
Length=690576
Score = 107 bits (118), Expect = 4e-18
Identities = 258/385 (67%), Gaps = 8/385 (2%)
Strand=Plus/Plus
Query 68405 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 68464
|||||| || | || |||||||| || || || || | ||||| | || | ||
Sbjct 72561 CCAAGCCTCGACCTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAATCCGAGACGAC 72620
Query 68465 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAA 68524
|| || || ||||| |||||||| ||||| ||||||||||| | |||||| ||
Sbjct 72621 GCCCTTCTACCCTCGTTCGCCTTACGGCGTTGCCAAGTTGTACGCCTTCTGGATCGTCAA 72680
Query 68525 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAG 68584
|| ||||| |||||||| ||||||| | |||||| || | ||||| ||| |||
Sbjct 72681 GAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCTTGTTCAACCAC--GAG 72738
Query 68585 TCCCAAC--AGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATT 68642
|||| | | || | ||||| || | |||||| || | ||||| | | |
Sbjct 72739 TCCCCGCGTCGTGGTCGCACCTTCGTCACGAGGAAAATCTCGCGAGCTGTCGCCGAGA-T 72797
Query 68643 TTCAATGGTGTCGAAA--AATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGG 68700
|| | | ||| | | | ||| | || ||||| || | || ||||| | || ||||
Sbjct 72798 CTCGCTCG-GTCAACAGGACTGCCTCTACCTCGGCAACTTGGAGGCCAAGCGTGACTGGG 72856
Query 68701 GATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATG 68760
|| | || || ||||| || | |||||| |||||||||| ||||| || || || |
Sbjct 72857 GACACGCACGCGACTACGTGGAGGGTATGTGGATGATGCTGCAGCAAGACACCCCCGACG 72916
Query 68761 ACTATGTGATTGCAACAGGGAAAAC 68785
||| ||| | || || || ||||
Sbjct 72917 ACTTTGTCCTCGCGACGGGCGAAAC 72941
>seq100
Length=649876
Score = 86.0 bits (94), Expect = 1e-11
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 333336 TAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAAA 333395
|||||||| ||||| ||||| | | ||| | ||||| || |||||||||||||||||
Sbjct 357739 TAACGCCACTGGATGTACTGCATCGCCGTCTTCTCAAGGTGTTCCTCGATGTGGTGGAAC 357798
Query 333396 GCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTC 333437
|| || || |||||||| || | ||||| || || ||||||
Sbjct 357799 GCGTGTTGAGCCACGTACGCGACACGCAAGTTAGGGTGCTTC 357840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102876820603750
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |