Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015495.1_202016-12-
23] 225 sequences; 40,892,155 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq90 107 2e-18
seq77 96.9 3e-15
seq143 87.8 2e-12
>seq90
Length=1083821
Score = 107 bits (118), Expect = 2e-18
Identities = 165/232 (71%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| ||||| | || | || || || | | | ||||||||||| ||||||||||||
Sbjct 178237 GCCACCTCGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGC 178178
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| || || |||||||| || || |||| |||| ||||| || ||||| || ||
Sbjct 178177 CAAGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGCGG 178118
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564
|| ||||| ||||| || | || ||||| | ||| || | ||||||| ||||||
Sbjct 178117 GATGCCTTCCTTGTC-TTGGATCTTGGTTTTGACGTTG-TCGATCGTGTCGGACGACTCG 178060
Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616
||||||| || | ||| || || || || || || || || || ||| |||
Sbjct 178059 ACCTCGAGGGTGATCGTCTTGCCCGTAAGTGTCTTGACGAAGATTTGCCTGG 178008
>seq77
Length=440787
Score = 96.9 bits (106), Expect = 3e-15
Identities = 157/226 (69%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| || | || || || | | | ||||||||||| |||||||||||| |
Sbjct 313166 CCACCACGCAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCC 313107
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || |||||||| || || |||| | |||| ||||| || ||||| || ||
Sbjct 313106 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGGGGG 313047
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| ||||| ||||| ||| || || | | || | || |||| |||||| |||
Sbjct 313046 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTATCGGACGACTCGACC 312987
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCA 138613
|||| || | || || || || || || || ||||| || ||||
Sbjct 312986 TCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCA 312941
>seq143
Length=1035691
Score = 87.8 bits (96), Expect = 2e-12
Identities = 100/132 (76%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 52698 TACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGC-AGCCAAAGTACTTCAA 52756
|||||||||||||| || || || ||||||| | || |||| | || ||| || ||
Sbjct 145036 TACATCGAGTTTGTCGCCGACCGCTTGTTGGT-CGCCTTGGGCAACCCCAAGGTCTGGAA 145094
Query 52757 CGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTT 52816
||| || || || || |||||||||| || ||||| ||||||||||| ||||| ||
Sbjct 145095 CGCCGAGAACCCCTTCGATTTTATGAACATGATCTCGCTCGAGGGCAAGACAAACTTCTT 145154
Query 52817 CGAGAAGCGAGT 52828
|||||||| ||
Sbjct 145155 TGAGAAGCGTGT 145166
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496261004262000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |