Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015495.1_202016-12- 23] 225 sequences; 40,892,155 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq119 159 4e-34 seq197 116 4e-21 seq143 107 2e-18 seq79 93.3 5e-14 >seq119 Length=1057158 Score = 159 bits (176), Expect = 4e-34 Identities = 602/938 (64%), Gaps = 21/938 (2%) Strand=Plus/Minus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 ||||| || ||||||||||| || || |||||| | | |||||| | || || Sbjct 673145 GCGATCGAGGCCAAATTGCAGACGGCGCACTCATCGGGCGCCGAGTACTCAATGATCTCG 673086 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 || |||| ||| || ||| ||||| || | |||||||||||| || ||||| Sbjct 673085 GTGCACAGGTTCGAGGACTTGATCGTGCCAAGGTTCTTTTGGTTAGATTTCTTGTTTGCG 673026 Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTC 106642 || ||||||||||||||| | || | || || || ||| | | |||||| || | | Sbjct 673025 GCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTCGACCTGGGCTTGGAGAATCGCGTAC 672966 Query 106643 CACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTA 106701 || | | | || || || | | ||||| || |||||| ||||| || | | Sbjct 672965 CAAAGCTTTTGC-GCGGGGATCGTCCTCTTGGCGCGACCCTCCTTTTCGTATTTCTCGAA 672907 Query 106702 GAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAA 106761 ||||| ||||| || | | ||| ||| || || || | | | || ||||| Sbjct 672906 CAGGGCGCGGAACTCTTCGTCATAGACTTCGTGGAGGCCGGGGGCTTCGGCAGGGCAGAA 672847 Query 106762 AAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGA 106821 |||| ||| | ||| | |||| || |||| ||| || || || || ||||| || | Sbjct 672846 GAGAGGCCACTCACCGGCGGCCTCGACACGCTCCATAAAGAGATCGGGGATCCAGAGCGC 672787 Query 106822 TGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAA 106881 | |||||||| | | || | || || | || ||||| || | || ||||| Sbjct 672786 AAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAA 672727 Query 106882 CTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC-- 106939 ||| | ||| || |||||||| ||||| || |||| |||| | ||| ||||| Sbjct 672726 CTCGAAGATGTCAGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCC---GGGACGCTT 672670 Query 106940 ----CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 106995 ||| |||| | || |||||||| ||| ||| | || || ||||| |||| || Sbjct 672669 GTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGAACGAT 672610 Query 106996 ACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGG 107053 || | || | || || || || ||| || ||| | | || | | | || Sbjct 672609 GCCGTTCGAGTAGCCGTTCGTACCGGCGATGTAGGAG--CCAGTCGCGCGGATGTTGTGA 672552 Query 107054 ATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCA 107113 ||| || || ||||| || || ||| || || |||| || | | || || | Sbjct 672551 ATGCTCAAACCGATACCACCGGCGGTCTTGGAAATGAGCGCGCAAGTCTTGAGCGTGTCG 672492 Query 107114 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 107173 ||||| || | || || || ||||| | | || ||||| || || | |||||| Sbjct 672491 TAGATGCCTTCAATCGAATCGTCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGG 672432 Query 107174 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATC 107233 || || || || || ||||| || || | ||||| | || | | |||||| Sbjct 672431 TGAGGCGTTCCGGCGTTAAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATG 672372 Query 107234 TTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGC 107293 || ||| | ||||||||| || ||||| | ||||||||||||||||| |||||| Sbjct 672371 AGGTTGTACGACTCCAAGACGCGCTCGATGTCGTGACCGTGGATGCCGATGGCGACACGC 672312 Query 107294 ATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTC 107353 || | ||||| || || ||| || |||| |||| || | | ||| | Sbjct 672311 ATGAGCATGTGCTGCGGGCGTTCGGCGACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGC 672252 Query 107354 TCAAGGGTTTTGAGACCAAA------GTAACCAAAATC 107385 || || ||||||| ||||| |||||||||||| Sbjct 672251 TCGAGCGTTTTGAAGCCAAAGTAGTTGTAACCAAAATC 672214 >seq197 Length=690576 Score = 116 bits (128), Expect = 4e-21 Identities = 266/395 (67%), Gaps = 4/395 (1%) Strand=Plus/Plus Query 6899 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 6958 |||| |||| |||||||| |||| ||| ||| || ||||| ||| | || ||| Sbjct 72552 CCGCTTCTACCAAGCCTCGACCTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAATC 72611 Query 6959 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 7018 |||| ||| ||||||||||| || ||| ||||| || | ||| | || || Sbjct 72612 CGAGACGACGCCCTTCTACCCTCGTTCGCCTTACGGCGTTGCCAAGTTGTACGCCTTCTG 72671 Query 7019 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 7078 | ||||||| || ||||||||||| |||| ||| |||||| ||| ||| | ||||| Sbjct 72672 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCTTGTTCAA 72731 Query 7079 CCATGAATCACCGAGACGAGGT-GCAGACTTTGTCACAAAGAAGAT-TACCGAGGGTATC 7136 ||| || || ||| | || ||| ||| ||| ||||| | ||| || | ||| | | || Sbjct 72732 CCACGAGTCCCCGCGTCGTGGTCGCA-CCTTCGTCACGAGGAAAATCTCGCGA-GCTGTC 72789 Query 7137 AAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGA 7196 | ||| | ||| || |||| | | | | | || ||| | | || || | Sbjct 72790 GCCGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAACTTGGAGGCCAAGCGT 72849 Query 7197 GATTGGGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAA 7256 || ||||| ||||| ||||| || || | |||||| | ||||| || ||||| Sbjct 72850 GACTGGGGACACGCACGCGACTACGTGGAGGGTATGTGGATGATGCTGCAGCAAGACACC 72909 Query 7257 GCCGACGAATATGTAGTAGCAACGGGTGAGACCCA 7291 ||||||| | ||| | || ||||| || ||||| Sbjct 72910 CCCGACGACTTTGTCCTCGCGACGGGCGAAACCCA 72944 >seq143 Length=1035691 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 6899 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 6958 |||| |||| || ||||| |||| ||| ||| || ||||| ||| | || || Sbjct 314710 CCGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTC 314651 Query 6959 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 7018 |||| ||| ||||||||||| |||||| |||||||||| | || | || || Sbjct 314650 CGAGACGACTCCCTTCTACCCTCGCTCGCCCTACGGAGTCGCCAAATTGTACGCCTTCTG 314591 Query 7019 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 7078 | ||||||| || ||||||||||| |||| ||| |||||| ||| ||||||||||| Sbjct 314590 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAA 314531 Query 7079 CCATGAATCACC 7090 ||| || || || Sbjct 314530 CCACGAGTCCCC 314519 >seq79 Length=1382791 Score = 93.3 bits (102), Expect = 5e-14 Identities = 202/296 (68%), Gaps = 10/296 (3%) Strand=Plus/Plus Query 169178 GATGAGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACC 169237 ||| |||||||||||||| || ||||| | ||| ||| | ||| ||||| || || Sbjct 733150 GATCAGACCCTTGATGTGCGATCCATCGTGATCTTGATCGGCCATGATCATGAGCTTGCC 733209 Query 169238 ATAGCGAAGTTCAGAAACATCTTGGTAGTCTTTTCCTTGTTGAAGACCCAAGATCTTCTT 169297 || || || || || ||| |||| || || || ||||||||||||| ||| Sbjct 733210 GTAACGGAGCGAGTCGACGTCGGTGTAAACTTTGCCCTGCTGCAGACCCAAGATCTGCTT 733269 Query 169298 GAGATCG-TTGAACTCTTGG-TTTGATGTGA---GCTGTGCCACTGAAGCGTCGCGGACA 169352 ||||| ||||| ||| || ||| | || ||| ||| | | || || || || Sbjct 733270 --GATCGCTTGAA-TCTCGGCATTGTCGAGAAGGGCTTTGC--CCGCCGCTTCACGTACG 733324 Query 169353 TTCTTACACTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGA 169412 || |||| || || | ||| ||||| ||||||| || || || ||||| | ||| Sbjct 733325 TTGAGCAACTTTCCTCGCAAAGGGAAGACACCATAGTTGTCTCGACCGACGACAGCCAGA 733384 Query 169413 CCCGCGACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTT 169468 |||| ||| ||||| | || || ||||| || || || | ||||| || ||||| Sbjct 733385 CCCGAGACGGCAAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGCGTGCACTT 733440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979140679000