Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015495.1_202016-12- 23] 225 sequences; 40,892,155 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq143 156 3e-33 >seq143 Length=1035691 Score = 156 bits (172), Expect = 3e-33 Identities = 200/273 (73%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 30114 CAGCTGATCCACCCCCATCCCCGAG-TAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGA 30172 || |||||| |||||| |||||| | || || || | | | | |||||||| |||| Sbjct 262111 CAACTGATCGACCCCC-TCCCCGCGATAATCATCCTTGGCGGTCCTATACTCTGCGCCGA 262169 Query 30173 AATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGC 30232 |||| |||||||| ||||| || |||||||||| |||||||||||||| || | || | Sbjct 262170 AATGTCTCCACTGAAACCCATAAACCGGTCCCAAATCTCCCTCTTCCCTATGTCCCAACC 262229 Query 30233 CCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGG 30292 | |||||||| ||| | ||| || || || | ||||| ||||| |||||||| | || Sbjct 262230 CAACCTTGTCCAGAAATTGTCTCGATCCATTCCCATCCCAAATCTTGACCCCCTTGTTGG 262289 Query 30293 AGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCT 30352 | | |||||| | || || |||| |||||||| || || ||||| | || | Sbjct 262290 ATAATAATTTGGAATCGGTCGATCCTCGAACGAACCAAAGGAGTTCCTCGATGATACCTC 262349 Query 30353 TCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30385 | ||||||| |||||||||| | ||||||| Sbjct 262350 GCGTAAAGACCTTCTTGGTCGTCAAAAGGGGAA 262382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408616479493925