Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015495.1_202016-12- 23] 225 sequences; 40,892,155 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq119 221 1e-51 seq91 100 3e-15 seq83 93.3 5e-13 >seq119 Length=1057158 Score = 221 bits (244), Expect = 1e-51 Identities = 338/481 (70%), Gaps = 17/481 (4%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||||||||||||||| |||| ||| |||| ||||||||||| |||| |||||| || Sbjct 672659 TGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGAACGATGCCGTTCGAG 672600 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||| || || || | ||||| ||| | ||||| | ||||| | || ||| Sbjct 672599 TAGCCGTTCGTACCGGCGATGTAGGAGCCAGTCGCGCGGATGTTGTGAATGCTCAAACCG 672540 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| | |||||| ||||||||||| |||||||||||||||||||| || Sbjct 672539 ATACCACCGGCGGTCTTGGAAATGAGCGCGCAAGTCTTGAGCGTGTCGTAGATGCCTTCA 672480 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 ||||| ||| ||||||| || || || || ||||| |||||||| | ||| ||| Sbjct 672479 ATCGAATCGTCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCG 672420 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGTG 1630365 ||||| |||||||| |||| || ||| || | || |||||| || ||| | Sbjct 672419 GCGTTAAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATGAGGTTGTACGAC 672360 Query 1630366 GCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGACG 1630425 | | |||||| || | |||| | || | | |||||||||||| Sbjct 672359 TCCAAGACGCGC------------TCGATGTCGTGA---CCGTGGATGCCGATGGCGACA 672315 Query 1630426 CGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCG-CGCACCTTGGTCAGGTAGGA 1630484 ||||||||||||| ||| || || ||| |||| |||| || | | || |||||| Sbjct 672314 CGCATGAGCATGTGCTGCGGGCGTTCGGCGACCTTGCCGTCGATGCGAAG-CAAGTAGGA 672256 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544 || | || ||| |||||||||| | ||||||||||||||| | ||||| Sbjct 672255 GCGCTCGAGCGTTTTGAAGCCAAAGTAGTTGTAACCAAAATCGCGGTCGTAGATAATGGC 672196 Query 1630545 G 1630545 | Sbjct 672195 G 672195 Score = 129 bits (142), Expect = 7e-24 Identities = 296/453 (65%), Gaps = 6/453 (1%) Strand=Plus/Minus Query 1628151 GGGCGACGAAAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTT 1628210 ||||| ||| ||| | |||||||||||||||||| | ||| | |||| || ||||| Sbjct 673110 GGGCGCCGAGTACTCAATGATCTCGGTGCACAGGTTCGAGGACTTGATCGTGCCAAGGTT 673051 Query 1628211 CTGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTC 1628270 || ||||| | || ||| |||||||||||| ||||||| | || |||||| || Sbjct 673050 CTTTTGGTTAGATTTCTTGTTTGCGGCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTC 672991 Query 1628271 GATCTGCGCCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGC---GC 1628327 || ||| || || || || |||| | || ||||||| || |||| | || Sbjct 672990 GACCTGGGCTTGGAGAATCGCGTACCAAAGCTTTTGCGCGGG---GATCGTCCTCTTGGC 672934 Query 1628328 GCGGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTG 1628387 ||| |||| || | || | ||| ||||| Sbjct 672933 GCGACCCTCCTTTTCGTATTTCTCGAACAGGGCGCGGAACTCTTCGTCATAGACTTCGTG 672874 Query 1628388 CAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCG 1628447 |||||||| || |||| || || ||||| | ||| || || ||| | | | || Sbjct 672873 GAGGCCGGGGGCTTCGGCAGGGCAGAAGAGAGGCCACTCACCGGCGGCCTCGACACGCTC 672814 Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507 ||||||||| || |||| || || | ||||| || || || ||| |||||||| Sbjct 672813 CATAAAGAGATCGGGGATCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACTTCCTCCTT 672754 Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567 |||||||||||| ||||| || | |||| ||||| |||||||||||||| ||||| Sbjct 672753 GCCGTGGTTCTTGCGAAGGTCCAGGAACTCGAAGATGTCAGCGTGCCACGGCTCGAGGTA 672694 Query 1628568 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 | || ||||| || |||||| ||| || Sbjct 672693 GATCGCGAAGGCTCCGGGACGCTTGTTGCCACC 672661 Score = 100 bits (110), Expect = 3e-15 Identities = 170/244 (70%), Gaps = 8/244 (3%) Strand=Plus/Minus Query 1626982 TGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCG 1627041 ||||||||||| |||| ||| || || |||||| | ||||||| ||||||||||| Sbjct 674259 TGGTCGACGGTGAACTTGATCGCACCGACGGCGGCGCGCGTGCGCAAGTAGTACATGCCA 674200 Query 1627042 GTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGT--GATGCGC--TCGGGCGT 1627097 ||||| || || || ||| |||| |||||||||||| | ||||| ||| | | Sbjct 674199 GTCTTCAGTCCTCGCTTCCAGCCGTAAAAGTGCATCGACGTCAGTTGCGCCATCGTGGGG 674140 Query 1627098 CGCGTCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGC 1627157 | || | ||| | ||| ||||| || |||||| | ||| | || ||||| Sbjct 674139 CTCGAC----AAGTGGATGTTTAGCGATTGCGACTGGTCAATGAAGGCACCTCGGTCGGC 674084 Query 1627158 CGCCATGTCGATGGTGACCCGGTTGGGCACCTCCCACACGGTCTTGAAGATGGCCTTGAG 1627217 | || |||||| || | | | | |||||| ||||||||| ||||||||||||| Sbjct 674083 GGACAAGTCGATAATGGTCTTTTGCGAGATCTCCCAGACGGTCTTGTAGATGGCCTTGAG 674024 Query 1627218 GTCG 1627221 ||| Sbjct 674023 ATCG 674020 >seq91 Length=2005964 Score = 100 bits (110), Expect = 3e-15 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCC-GTG 19111 ||||| || ||||| |||||||| ||||||| ||| || ||||| ||||| ||| Sbjct 378354 ATCGGTGGTACGGTCACGTGCGTTATCCGCAACGCTCCGTTCGGTCTCGGAGAGCCCGTG 378295 Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171 || |||||| | || ||| | ||||||||||||||||||||||| || |||||||| Sbjct 378294 -TTCGACAAGTTGGAAGCCCTTTTGGCCCACGCCATGCTGTCGATCCCCGCAACCAAGGG 378236 Query 19172 ATTCGAGATTGG 19183 || |||||||| Sbjct 378235 CTTTGAGATTGG 378224 >seq83 Length=1596178 Score = 93.3 bits (102), Expect = 5e-13 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| ||| || ||| | | ||||| || || | |||||| |||||||||| || Sbjct 792834 GCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCGAGGTCTGAATCTCGCGCGATGAGA 792893 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 |||| ||| | |||| || ||| || | |||||| | ||| || |||| Sbjct 792894 TCGTCGACTTGTGGTTGT---AGGTCGCGAGCTTGGATGCCTCGAGGGAGATACGTTCGA 792950 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || ||||| |||||| ||||| ||| ||||| Sbjct 792951 AGATGTCGTTGACGAACGAGTTGAGGATGAGCATCGCCTTGTTCGAGATACCCGTGTCGG 793010 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 | || || ||||| | ||||||| Sbjct 793011 GATGGACTTGCTTCAACACCTTG 793033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107120735446325