Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015495.1_202016-12- 23] 225 sequences; 40,892,155 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq119 179 6e-39 seq83 109 9e-18 seq143 107 3e-17 >seq119 Length=1057158 Score = 179 bits (198), Expect = 6e-39 Identities = 195/259 (75%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| |||||||| |||| ||| |||| ||||||||||| || | |||||| || Sbjct 672659 TGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGAACGATGCCGTTCGAG 672600 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | |||||| || || || | ||||| ||| | ||||| | ||||| | || ||| Sbjct 672599 TAGCCGTTCGTACCGGCGATGTAGGAGCCAGTCGCGCGGATGTTGTGAATGCTCAAACCG 672540 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || ||||| | |||||| ||||||||||| | || ||||| ||||||||||| || Sbjct 672539 ATACCACCGGCGGTCTTGGAAATGAGCGCGCAAGTCTTGAGCGTGTCGTAGATGCCTTCA 672480 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 ||||| ||| ||||||| | ||| || || ||||| |||||| | | ||| ||| Sbjct 672479 ATCGAATCGTCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCG 672420 Query 2073781 GCATTGAAGAGCGTGGGCG 2073799 || || |||||||| |||| Sbjct 672419 GCGTTAAAGAGCGTCGGCG 672401 Score = 141 bits (156), Expect = 1e-27 Identities = 297/449 (66%), Gaps = 0/449 (0%) Strand=Plus/Minus Query 2071564 GGCGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTC 2071623 |||| ||| ||| | || ||||||||||||||| | ||| | | ||||| |||||| Sbjct 673109 GGCGCCGAGTACTCAATGATCTCGGTGCACAGGTTCGAGGACTTGATCGTGCCAAGGTTC 673050 Query 2071624 TGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCG 2071683 | ||||| || ||| |||||||||||| |||||| | || || || ||| Sbjct 673049 TTTTGGTTAGATTTCTTGTTTGCGGCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTCG 672990 Query 2071684 ATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGG 2071743 | ||| || || || || |||||| | ||||||| | || || | ||||| Sbjct 672989 ACCTGGGCTTGGAGAATCGCGTACCAAAGCTTTTGCGCGGGGATCGTCCTCTTGGCGCGA 672930 Query 2071744 CCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGG 2071803 |||| | |||||| || | || | | | ||||| ||| Sbjct 672929 CCCTCCTTTTCGTATTTCTCGAACAGGGCGCGGAACTCTTCGTCATAGACTTCGTGGAGG 672870 Query 2071804 CCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATA 2071863 ||||| || |||| ||||| ||||| | ||| || ||| | | | | || || |||| Sbjct 672869 CCGGGGGCTTCGGCAGGGCAGAAGAGAGGCCACTCACCGGCGGCCTCGACACGCTCCATA 672810 Query 2071864 AACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCG 2071923 || || ||| |||| || | | |||||||| || || ||| |||||||||||| Sbjct 672809 AAGAGATCGGGGATCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCG 672750 Query 2071924 TGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAG 2071983 |||||||| ||||| || | |||| || ||| |||||||||||||| |||||| Sbjct 672749 TGGTTCTTGCGAAGGTCCAGGAACTCGAAGATGTCAGCGTGCCACGGCTCGAGGTAGATC 672690 Query 2071984 GCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 || ||||| || |||||| ||| || Sbjct 672689 GCGAAGGCTCCGGGACGCTTGTTGCCACC 672661 Score = 95.1 bits (104), Expect = 2e-13 Identities = 172/245 (70%), Gaps = 14/245 (6%) Strand=Plus/Minus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 ||||||||||| |||| ||| || | |||| | || ||||||| ||||||||||| Sbjct 674259 TGGTCGACGGTGAACTTGATCGCACCGACGGCGGCGCGCGTGCGCAAGTAGTACATGCCA 674200 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCAT--TCG 2069368 ||||| || || || ||| |||| |||||||||||| | | || ||| | | Sbjct 674199 GTCTTCAGTCCTCGCTTCCAGCCGTAAAAGTGCATCGACGTCA--GTTGCGCCATCGTGG 674142 Query 2069369 GG-ACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427 || || || ||| || ||| ||||| || |||||| | ||| | |||||||| Sbjct 674141 GGCTCGACA-AGTGGATGTTTAGCGATTGCGACTGGTCAATGAAGGCACCTCGGTCGGCG 674083 Query 2069428 GCCATGTCG---ATGGTCACGCGGTTG-GACACCTCCCACACGGTCTTGAACAGGGCCTT 2069483 | || |||| ||||| | ||| || | |||||| ||||||||| | | |||||| Sbjct 674082 GACAAGTCGATAATGGT----CTTTTGCGAGATCTCCCAGACGGTCTTGTAGATGGCCTT 674027 Query 2069484 GAGAT 2069488 ||||| Sbjct 674026 GAGAT 674022 >seq83 Length=1596178 Score = 109 bits (120), Expect = 9e-18 Identities = 161/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 |||| || || || |||| ||||||| ||| ||| || ||| | | ||||| || || | Sbjct 792810 CCTTTGTGCCTTCCGAGATGGCGTGCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCG 792869 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 |||||| |||||||| | |||||| ||| | |||| || ||| || | Sbjct 792870 AGGTCTGAATCTCGCGCGATGAGATCGTCGACTTGTGGTTGTAGGT---CGCGAGCTTGG 792926 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 |||||| | ||| || |||| ||||||||||| |||||||| | ||| ||||| Sbjct 792927 ATGCCTCGAGGGAGATACGTTCGAAGATGTCGTTGACGAACGAGTTGAGGATGAGCATCG 792986 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| ||| |||||| || || ||||| | ||||||| Sbjct 792987 CCTTGTTCGAGATACCCGTGTCGGGATGGACTTGCTTCAACACCTTG 793033 Score = 104 bits (114), Expect = 4e-16 Identities = 160/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 |||| ||||| || |||| ||||||| | | ||| || ||| | | ||||| || || | Sbjct 1568210 CCTTTGTACCTTCCGAGATGGCGTGCTTTGACAGCTCTCCGGGGAGGATCAATCGGACCG 1568269 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 |||||| ||||| || | |||||| ||| | |||| || ||| || | Sbjct 1568270 AGGTCTGAATCTCACGCGATGAGATCGTCGACTTGTGGTTGTAGGT---CGCGAGCTTGG 1568326 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 |||||| | ||| || |||| ||||||||||| |||||||| | ||| ||||| Sbjct 1568327 ATGCCTCGAGGGAGATACGTTCGAAGATGTCGTTGACGAACGAGTTGAGGATGAGCATCG 1568386 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| ||| |||||| || || ||||| | ||||||| Sbjct 1568387 CCTTGTTCGAGATACCCGTGTCGGGATGGACTTGCTTCAACACCTTG 1568433 Score = 100 bits (110), Expect = 5e-15 Identities = 154/217 (71%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 ||||||| || || |||| ||||||| ||| || ||| || | | ||||| ||| || | Sbjct 461347 CCTTGGTGCCTTCCGAGATGGCGTGCTTGGACAATTCTCCAGGAAGGATCAAGCGAACCG 461288 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG---CGCCAGGCGGC 1485601 |||||| |||||||| | |||||| || |||||| || ||| || | Sbjct 461287 AGGTCTGAATCTCGCGTGACGAGATCGTC--GC-CTTGTTGTTGTAGGTCGCGAGCTTGG 461231 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 |||||| | ||| || || | ||||||||||| |||||||| | ||| ||||| Sbjct 461230 ATGCCTCGAGGGAGATACGCTCAAAGATGTCGTTGACGAACGAGTTGAGGATGAGCATCG 461171 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTT 1485698 ||||| ||||| ||| ||||||||| || ||||| Sbjct 461170 CCTTGTTCGAGATACCCGTGTCGGGGTGGACTTGCTT 461134 >seq143 Length=1035691 Score = 107 bits (118), Expect = 3e-17 Identities = 145/199 (73%), Gaps = 5/199 (3%) Strand=Plus/Minus Query 796150 GCCTCGG-GTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 ||||||| | ||| ||||||| ||| || || ||| |||||| || || || Sbjct 144188 GCCTCGGCGGACT-GGACCTCACCAGAGAATCGCTCGACCAAGTTCTCGTTGACAATCCC 144130 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 |||| ||||||||||||||||||||||||| ||| |||| ||||||||| |||| Sbjct 144129 GTCGGAGGCGGCGAAAAAGGCGAGGACGTGCGAGATGAAGTAGCGCTCGTCGGGCTTGAG 144070 Query 796269 C---GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGA 796325 | | |||||| | | |||| | | ||| | ||| ||||||||||| ||||| Sbjct 144069 CTTGTTGTCCCAGTCGTGCATGTCCTTGGACAAGTCCATCTCTTCGGCGGTCCAGAAGGA 144010 Query 796326 GGCCTCGGCCTTTTTGTAC 796344 ||||||||||| |||||| Sbjct 144009 TGCCTCGGCCTTCTTGTAC 143991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916222465723775