Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015495.1_202016-12- 23] 225 sequences; 40,892,155 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq119 178 2e-39 seq197 116 5e-21 seq143 107 2e-18 >seq119 Length=1057158 Score = 178 bits (196), Expect = 2e-39 Identities = 606/938 (65%), Gaps = 21/938 (2%) Strand=Plus/Minus Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 ||||| || ||||||||||| || || |||||| | | |||||| | || || Sbjct 673145 GCGATCGAGGCCAAATTGCAGACGGCGCACTCATCGGGCGCCGAGTACTCAATGATCTCG 673086 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 || || | ||| || ||| ||||| || | |||||||||||| |||||||| Sbjct 673085 GTGCACAGGTTCGAGGACTTGATCGTGCCAAGGTTCTTTTGGTTAGATTTCTTGTTTGCG 673026 Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415 || ||||||||||||||| | || | || || || ||| | || |||||| || | | Sbjct 673025 GCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTCGACCTGGGCTTGGAGAATCGCGTAC 672966 Query 111416 CAAA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTA 111474 |||| | | || || || | | ||||| || |||||| ||||| || | | Sbjct 672965 CAAAGCTTTTGC-GCGGGGATCGTCCTCTTGGCGCGACCCTCCTTTTCGTATTTCTCGAA 672907 Query 111475 GAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAA 111534 ||||| ||||| || | | ||| ||| || || || | | | || ||||| Sbjct 672906 CAGGGCGCGGAACTCTTCGTCATAGACTTCGTGGAGGCCGGGGGCTTCGGCAGGGCAGAA 672847 Query 111535 AAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGA 111594 |||| ||| | ||| | |||| || |||| ||| || || || || ||||| || | Sbjct 672846 GAGAGGCCACTCACCGGCGGCCTCGACACGCTCCATAAAGAGATCGGGGATCCAGAGCGC 672787 Query 111595 TGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAA 111654 | |||||||| | | || | || || | || ||||| || | || ||||| Sbjct 672786 AAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAA 672727 Query 111655 CTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC-- 111712 ||| | ||| || |||||||| ||||| || |||| |||| | ||| ||||| Sbjct 672726 CTCGAAGATGTCAGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCC---GGGACGCTT 672670 Query 111713 ----CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 111768 ||| |||| | || |||||||| ||| ||| | || || ||||| |||| || Sbjct 672669 GTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGAACGAT 672610 Query 111769 ACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGG 111826 || | || | || || || || ||| || ||| | | || | | | || Sbjct 672609 GCCGTTCGAGTAGCCGTTCGTACCGGCGATGTAGGAG--CCAGTCGCGCGGATGTTGTGA 672552 Query 111827 ATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCA 111886 ||| || || ||||| || || ||| || || |||| || | | || || | Sbjct 672551 ATGCTCAAACCGATACCACCGGCGGTCTTGGAAATGAGCGCGCAAGTCTTGAGCGTGTCG 672492 Query 111887 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 111946 ||||| || | || || || ||||| | | || ||||| || || | |||||| Sbjct 672491 TAGATGCCTTCAATCGAATCGTCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGG 672432 Query 111947 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATC 112006 || || || || || ||||| || || | ||||| | || | | |||||| Sbjct 672431 TGAGGCGTTCCGGCGTTAAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATG 672372 Query 112007 TTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGC 112066 || ||| | ||||||||| || ||||| | |||||||||||||| ||||| ||| Sbjct 672371 AGGTTGTACGACTCCAAGACGCGCTCGATGTCGTGACCGTGGATGCCGATGGCGACACGC 672312 Query 112067 ATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTC 112126 |||| ||||| ||| ||| ||| || |||| |||| || | | ||| | Sbjct 672311 ATGAGCATGTGCTGCGGGCGTTCGGCGACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGC 672252 Query 112127 TCAAGGGTTTTGAGACCAAA------GTAACCAAAATC 112158 || || ||||||| ||||| |||||||||||| Sbjct 672251 TCGAGCGTTTTGAAGCCAAAGTAGTTGTAACCAAAATC 672214 >seq197 Length=690576 Score = 116 bits (128), Expect = 5e-21 Identities = 266/395 (67%), Gaps = 4/395 (1%) Strand=Plus/Plus Query 9155 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 9214 |||| |||| |||||||| |||| ||| ||| || ||||| ||| | || ||| Sbjct 72552 CCGCTTCTACCAAGCCTCGACCTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAATC 72611 Query 9215 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 9274 |||| ||| ||||||||||| || ||| ||||| || | ||| | || || Sbjct 72612 CGAGACGACGCCCTTCTACCCTCGTTCGCCTTACGGCGTTGCCAAGTTGTACGCCTTCTG 72671 Query 9275 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 9334 | ||||||| || ||||||||||| |||| ||| |||||| ||| ||| | ||||| Sbjct 72672 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCTTGTTCAA 72731 Query 9335 CCATGAATCACCGAGACGAGGT-GCAGACTTTGTGACCATGAAGAT-TACCGAGGGTATC 9392 ||| || || ||| | || ||| ||| ||| || || | ||| || | ||| | | || Sbjct 72732 CCACGAGTCCCCGCGTCGTGGTCGCA-CCTTCGTCACGAGGAAAATCTCGCGA-GCTGTC 72789 Query 9393 AAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGA 9452 | ||| | ||| || |||| | | | | | || ||| | | || || | Sbjct 72790 GCCGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAACTTGGAGGCCAAGCGT 72849 Query 9453 GATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAA 9512 || ||||| ||||| ||||| || || | ||||||| | ||||| || ||||| Sbjct 72850 GACTGGGGACACGCACGCGACTACGTGGAGGGTATGTGGATGATGCTGCAGCAAGACACC 72909 Query 9513 GCCGACGAATATGTAGTAGCAACGGGTGAGACCCA 9547 ||||||| | ||| | || ||||| || ||||| Sbjct 72910 CCCGACGACTTTGTCCTCGCGACGGGCGAAACCCA 72944 >seq143 Length=1035691 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 9155 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 9214 |||| |||| || ||||| |||| ||| ||| || ||||| ||| | || || Sbjct 314710 CCGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTC 314651 Query 9215 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 9274 |||| ||| ||||||||||| |||||| |||||||||| | || | || || Sbjct 314650 CGAGACGACTCCCTTCTACCCTCGCTCGCCCTACGGAGTCGCCAAATTGTACGCCTTCTG 314591 Query 9275 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 9334 | ||||||| || ||||||||||| |||| ||| |||||| ||| ||||||||||| Sbjct 314590 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAA 314531 Query 9335 CCATGAATCACC 9346 ||| || || || Sbjct 314530 CCACGAGTCCCC 314519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030233660000