Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015495.1_202016-12-
23] 225 sequences; 40,892,155 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq79 122 1e-22
seq197 114 2e-20
seq143 111 2e-19
>seq79
Length=1382791
Score = 122 bits (134), Expect = 1e-22
Identities = 234/337 (69%), Gaps = 10/337 (3%)
Strand=Plus/Plus
Query 169160 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 169219
|||| || |||||||||||||| || || |||| ||| ||| | ||||||||||||
Sbjct 733145 TTGATGATCAGACCCTTGATGTGCGATCCATCGTGATCTTGATCGGCCATGATCATGAGC 733204
Query 169220 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 169279
|| || || ||| | || || || | || ||||| || ||||||||||||
Sbjct 733205 TTGCCGTAACGGAGCGAGTCGACGTCGGTGTAAACTTTGCCCTGCTGCAGACCCAAGATC 733264
Query 169280 TTCTTGAGATCG-TTGAACTCTTGGT-TTGATGTGAGCTG-TGTGACAGAGGCATCGCGA 169336
| ||||| ||| ||||| ||| || ||| | || | | || | | || || ||
Sbjct 733265 TGCTTGA--TCGCTTGAA-TCTCGGCATTGTCGAGAAGGGCTTTGCCCGCCGCTTCACGT 733321
Query 169337 ACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAG 169396
|| || |||| || || | |||||||||||| |||| || ||||| ||||| |
Sbjct 733322 ACGTTGAGCAACTTTCCTCGCAAAGGGAAGACACCATAGTTGTCTCGACCGACGACAGCC 733381
Query 169397 AGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTT- 169455
||||||| ||| || || | ||| || || || || ||||| | ||||||||| || ||
Sbjct 733382 AGACCCGAGACGGCAAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGCGTGCACTTG 733441
Query 169456 -TCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATC 169491
|| | | | |||||| || || |||||||| ||
Sbjct 733442 GACCCGTTCCT--CGTACCAGCGTTATTCGCATCTTC 733476
>seq197
Length=690576
Score = 114 bits (126), Expect = 2e-20
Identities = 265/394 (67%), Gaps = 4/394 (1%)
Strand=Plus/Plus
Query 7232 CGCGTATACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAAC 7291
||| | ||||||||||| || || ||| ||| || || ||| || || || ||| |
Sbjct 72553 CGCTTCTACCAAGCCTCGACCTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAATCC 72612
Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 7351
||| ||| ||||||||||| || ||| ||||| || | ||| | || |||
Sbjct 72613 GAGACGACGCCCTTCTACCCTCGTTCGCCTTACGGCGTTGCCAAGTTGTACGCCTTCTGG 72672
Query 7352 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 7411
||||||| || ||||||||||| |||| ||| |||||| ||| ||| | ||||||
Sbjct 72673 ATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCTTGTTCAAC 72732
Query 7412 CATGAATCACCGAGACGAGGT-GCAGACTTTGTCACAAAGAAGAT-TACCGAGGGTATCA 7469
|| || || ||| | || ||| ||| ||| ||||| | ||| || | ||| | | ||
Sbjct 72733 CACGAGTCCCCGCGTCGTGGTCGCA-CCTTCGTCACGAGGAAAATCTCGCGA-GCTGTCG 72790
Query 7470 AACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGCGAGAG 7529
| ||| | ||| || |||| | | | | | || ||| | | || | | |
Sbjct 72791 CCGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAACTTGGAGGCCAAGCGTG 72850
Query 7530 ATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAG 7589
| ||||| ||||| ||||| || || | ||||||| | ||||| || |||||
Sbjct 72851 ACTGGGGACACGCACGCGACTACGTGGAGGGTATGTGGATGATGCTGCAGCAAGACACCC 72910
Query 7590 CCGACGAATATGTAGTAGCAACGGGTGAGACCCA 7623
||||||| | ||| | || ||||| || |||||
Sbjct 72911 CCGACGACTTTGTCCTCGCGACGGGCGAAACCCA 72944
>seq143
Length=1035691
Score = 111 bits (122), Expect = 2e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 7232 CGCGTATACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAAC 7291
||| | ||||| ||||| || |||||| ||| || || ||| || || || || |
Sbjct 314709 CGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTCC 314650
Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 7351
||| ||| ||||||||||| |||||| |||||||||| | || | || |||
Sbjct 314649 GAGACGACTCCCTTCTACCCTCGCTCGCCCTACGGAGTCGCCAAATTGTACGCCTTCTGG 314590
Query 7352 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 7411
||||||| || ||||||||||| |||| ||| |||||| ||| ||||||||||||
Sbjct 314589 ATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAAC 314530
Query 7412 CATGAATCACC 7422
|| || || ||
Sbjct 314529 CACGAGTCCCC 314519
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583259159579000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |