Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015505.1_202016-12- 23] 42 sequences; 25,806,628 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq26 86.0 1e-11 seq24 86.0 1e-11 >seq26 Length=2192579 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 319012 TAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAAA 319071 |||||||||||||| ||||| | | ||| | || || || ||||||||||||||||| Sbjct 1907147 TAACGCCATTGGATGTACTGCATCGCCGTCTTCTCGAGGTGCTCCTCGATGTGGTGGAAC 1907088 Query 319072 GCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTC 319113 || || || |||||||| || | ||||| || || |||||| Sbjct 1907087 GCGTGTTGGGCCACGTACGCTACACGCAAGTTGGGGTGCTTC 1907046 >seq24 Length=1584903 Score = 86.0 bits (94), Expect = 1e-11 Identities = 177/260 (68%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 281768 GTCTTTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGG--CAACAACCAGTTAATG 281825 |||||||||||| |||| | || ||||| ||||| | ||| | | || ||| | | Sbjct 561779 GTCTTTACCACCTTGCAAACGCGTACCAAATTGACCGTTCGGGTCGAGAA--TGTTGAGG 561722 Query 281826 TTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCA 281885 || ||| ||| || | | || ||||| || ||| || || || | | ||| Sbjct 561721 TTGTTGGACCCTACAAACTGTTGCGCCAGACCGATGATGGTGCCTTGCAAACTCATTTCA 561662 Query 281886 CCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTTCACGTCT 281945 ||||| || || || ||| ||||| || ||||| | || ||| | ||||| | ||| Sbjct 561661 CCGTGATGGTACGCCGAGTGCTCGGCGACGTAACCGCCCAATTGTCCGACCTTGATCTCT 561602 Query 281946 GATGTCAAGTTGCGTTTGAAAGCGCAA---TATAATACTTTTCGTTGAGAAGGCTTGAAA 282002 ||||| ||||| ||||| |||| | || || || |||||| |||||||| Sbjct 561601 TGCGTCAATTTGCGCTTGAA---GCAACCGAACAAGACCTTGCGTTGACCCGGCTTGAAC 561545 Query 282003 CCATCAACGACAGACGGAAT 282022 ||||||| |||||| ||||| Sbjct 561544 CCATCAATGACAGAGGGAAT 561525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823430758460