Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015505.1_202016-12- 23] 42 sequences; 25,806,628 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq25 275 6e-69 seq38 118 9e-22 seq24 107 2e-18 >seq25 Length=1823320 Score = 275 bits (304), Expect = 6e-69 Identities = 963/1493 (65%), Gaps = 50/1493 (3%) Strand=Plus/Minus Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| |||| ||||| | || ||| || || |||||| ||||| ||||||||| Sbjct 22333 GAAGTGTACGGCTCGAAGCACTCGTTGAAGCCGAGGATCTGACTTGTCGACGCGGTCGGC 22274 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATC 22621 || || || | | |||||||| | | |||||||||| ||| || ||||||| Sbjct 22273 ATGGGAGCGCAGACGAGCGAGTTGCGGAGACCGTGCTTTGCAATCTTCTCCTTGAGCTCG 22214 Query 22622 GACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCG 22681 ||||||||||||| |||| ||| |||||| |||||| |||||| |||||| |||| Sbjct 22213 GACCAGTCCCACAAATCGCTCGGGGTCACA---CCCCACAAATCGTACTGCAACTCGCCC 22157 Query 22682 CGACTCGCCGGGCTGCCTTCGTACGTTTCGTA-----CGG----ACCA------------ 22720 || ||||| || ||| || ||| ||| || | Sbjct 22156 TGAGAAGCCGGAGATCCGGGGTAAGTCGAGTAGTAGCCGGGGTCACTAGGGTTAGCGATG 22097 Query 22721 --TATATCGCG-GCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAG 22777 | ||||| || | ||||| || ||| | |||| ||| || || ||||||||| Sbjct 22096 GCAAAGTCGCGCGCCATATCGCACGACGACTCGATCGCGGCGTGGTAGATGGTCTCGAAG 22037 Query 22778 ATTTTCTTGTTCA-ATTCGGCGGC---GGCGACGCTTTCGTACGGCATACGCATCATCAC 22833 || | |||||| | || ||| | || || ||| ||||||| || || Sbjct 22036 ATCTGCTTGTTGAGCTTGCGCGCCTCGGGTGA----ATCGAACGGCATCGCCAAGGCCAT 21981 Query 22834 GAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACAC 22893 ||| ||||| || | ||| || || || || ||||| || |||| | || || Sbjct 21980 GAATGCGTCGGCGAGACCTTGCACTCCGATGCCGATGGGGCGGTGGCGGAAGTTGGAGTT 21921 Query 22894 TTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCAC 22953 || |||||| | || || | || || || | | ||||||||| | || Sbjct 21920 TTGCGCCTCGATGACGGGGTAGTAGTTAACGTCAATGATGCGGTTCAAGTTGAAAGCGAC 21861 Query 22954 AATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACAACAAACTT 23013 | || | | |||||||| ||||| || | | || || Sbjct 21860 GACCTTGACGACCTCGTGCAGCTTCTTGAAGTCGTACACGCC--GTTCTTGATGAAGCTC 21803 Query 23014 GTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTAC 23073 | ||| |||||||||| | ||||| ||||| |||||| | | |||||| | Sbjct 21802 GGCAACG-CGATCGAGGCCAAGTTGCAGACGGCGCACTCGTCCGGCGCGGAGTACTCGAT 21744 Query 23074 AATTTCGGTACATAGATTGCTAC-ACTTTATCGTGCCCAAATTGCTCTGGTT-GCTTTTT 23131 |||||||| || || || | || |||| |||||||| | || | ||||| | ||| | Sbjct 21743 GATTTCGGTGCACAGGTT-CGACGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTCT 21685 Query 23132 CGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATG 23191 | |||| | ||||||||||||||| |||| |||| || |||||||| | ||||| Sbjct 21684 TGTTTGC-GGCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTCGACCTGGGCCTCGAGA 21626 Query 23192 ATCGCTCGCCACATAGTCTGAGCGTGAACACGTC-GCACGTACCTGCCTTCTTCCTCGTA 23250 ||||| ||| | | || ||| | | |||| | | | ||| || | ||||| Sbjct 21625 ATCGCGTACCAAAGCTTTTGCGCGGGGA-TCGTCTTCTTGGCGCGGCCCTCCTTTTCGTA 21567 Query 23251 CTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCAT 23310 || | | ||| ||| || || | || ||| ||| |||||||| | || Sbjct 21566 TTTCTCGAACAGGGCGCGGAACTCTTCGCCATAAACTTCGTGGAGGCCGGGGGCTTCGGC 21507 Query 23311 CGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTAT 23370 || || | || ||| | | || || || ||| || ||||| || || Sbjct 21506 GGGGCAGAACAGGGGCCAGTCGCCGGCGGCCTCGACTCGCTCCATGAAGAGATCGGGGAT 21447 Query 23371 CCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAA 23430 ||| || || |||| || || || ||||| || ||||| |||||| |||||| | Sbjct 21446 CCAGAGCGCAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAG 21387 Query 23431 ATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGG 23490 |||| || || || ||||| || ||||| ||||||||||| | || || || || || Sbjct 21386 GTCCAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATCGCGAAGGCTCCGGG 21327 Query 23491 TCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGG 23550 | ||| ||||| || || |||||||| || || || |||||||| || | ||||| || Sbjct 21326 ACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCGGTATTGTTGTAGACACGGAGCATGGG 21267 Query 23551 CACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTT 23610 |||| ||||| || |||| ||| || | || || | || || | ||| Sbjct 21266 GACGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTAAGAGCCGGTCGCGCGGATGTT 21207 Query 23611 GTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGT 23670 ||| | | ||||| || || ||| | | || || || | |||||| || || || Sbjct 21206 GTGGATGCTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGT 21147 Query 23671 GTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTG 23730 |||||||||||| ||||| || || || ||| ||||| ||| ||||| || | || Sbjct 21146 GTCGTAGATGCCTTCGATCGAATCATCCTTCATCGTGACCAGGAAGCACGACGAAAGCTG 21087 Query 23731 CGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGA 23790 || | ||||| |||| ||| |||||||| |||||| |||||||| | | ||| Sbjct 21086 CGGGTGAGGCGTTCCGGCGTTGAAGAGTGTCGGCGAGGCGTGGGTAAAGTAGCGCTCCGA 21027 Query 23791 CATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGAC 23850 ||| || ||||||| | | | || || ||||| | ||||| || |||| |||||| Sbjct 21026 CATGAGGTTGTACGACTGCAAGACGCGCTCGATGTCGTGACCGTGGATGCCGACGGCGAC 20967 Query 23851 GCGCATCATCATGTATTGAGGTC--TC-TCGACCGTGACGCCGTTAATTTTGAACAGATA 23907 |||||| | ||||| ||| |||| || ||||| | ||||| || | || ||| Sbjct 20966 GCGCATGAGCATGTGTTGCGGTCGTTCGGCGACCTT---GCCGTCGATGCGAAGCAAATA 20910 Query 23908 TGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGT 23960 || || | | ||| || || ||||| |||| ||| || || ||||||| Sbjct 20909 CGAGCGCTCGAGCGTCTTGAAGCCAAAGTAGTTGTAGCCGAAATCGCGATCGT 20857 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| ||||| ||||| || |||||| |||| || || | || Sbjct 1053631 ATGCAAATCTTTGTCAAGACGCTGACGGGCAAGACAATCACCCTCGAGGTCGAGTCTTCG 1053572 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | |||||||| || | || || ||||| Sbjct 1053571 GACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAGGGTATTCCCCCAGACCA 1053513 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||||||||| ||| | || || || | ||| || || Sbjct 1053512 GCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGACTACAA 1053453 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || ||||| ||||| ||||| |||| || Sbjct 1053452 CATCCAGAAAGAGTCGACCCTTCACTTGGTGCT 1053420 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 1296362 ATGCAAATCTTTGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 1296303 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | ||| ||||||||| ||| | || || ||||| Sbjct 1296302 GACACGATTGACAACGTCAAGGCCAAAATCCAGGACAAGGAGGGCATTCCCCCAGACCAA 1296243 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA---CTCTATGACTATGAGCGATTAT 31369 || ||||| || || || ||||| || | || || | || | || | | ||||| Sbjct 1296242 CAACGTCTTATCTTTGCGGGCAAGCAACTCGAGGATGGCCGTACG-CTC-GCG-GATTAC 1296186 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||||||||| || ||||| || || |||| || Sbjct 1296185 AACATTCAAAAGGAGTCGACCCTCCACTTGGTGCT 1296151 >seq38 Length=1003587 Score = 118 bits (130), Expect = 9e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || || |||||| ||||| |||||||| |||||||| ||||||||| |||| || || | Sbjct 148942 AATCAGGCAAATCTTCGTCAAGACTCTTACAGGCAAGACGATCACCCTCGAGGTCGAGTC 149001 Query 31249 GTCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 |||||||| |||| | ||||| || ||| | |||||||||||| | || || | Sbjct 149002 GTCCGACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCCCCAG 149060 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||| ||||| || || || ||||| ||| | || || || | ||||| Sbjct 149061 ACCAGCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATT 149120 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| ||||| || ||||| || || |||| || Sbjct 149121 ACAACATCCAAAAGGAGTCGACCCTCCACTTGGTCCT 149157 >seq24 Length=1584903 Score = 107 bits (118), Expect = 2e-18 Identities = 169/239 (71%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 ||||||| ||||| ||||| || || ||||| || |||||| |||| || || |||||| Sbjct 1347578 TGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 1347519 Query 31254 ACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| |||| | ||||| || ||| | |||||||||||| | || || |||||| Sbjct 1347518 ACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCCCCAGACCAG 1347460 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || ||||| ||| | || || || | |||||| ||| Sbjct 1347459 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAC 1347400 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAGCG 31427 || ||||| || ||||| || || |||| || | ||| | || ||| ||||||| Sbjct 1347399 ATCCAAAAGGAGTCGACGCTCCACTTGGTGCTCCGCCTGCGTGGTGGTGCCAAGAAGCG 1347341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766165972640