Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015505.1_202016-12-
23] 42 sequences; 25,806,628 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq24 181 2e-41
seq28 158 2e-34
>seq24
Length=1584903
Score = 181 bits (200), Expect = 2e-41
Identities = 160/200 (80%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || |||||||| || ||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 889642 CGCGACAACATCCAGGGTATCACCAAGCCCGCTATCCGCCGTCTCGCTCGTCGTGGTGGT 889583
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| |||| || ||| |||| ||||||| || | || ||||||||||||||
Sbjct 889582 GTCAAGCGTATCTCCGGCTTGATCTACGAAGAGACCCGAGGCGTCCTGAAGATCTTCCTC 889523
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| |||| ||| | || ||| ||||||||||| || || ||||| ||||||
Sbjct 889522 GAGAACGTCATCCGTGACTCGGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACC 889463
Query 16637 TCCATGGATATCGTCTATGC 16656
|| | ||| ||||||| ||
Sbjct 889462 TCGCTCGATGTCGTCTACGC 889443
Score = 174 bits (192), Expect = 2e-39
Identities = 180/236 (76%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || ||||| || || ||||||||||| |||||||| ||||| || |||||||||||
Sbjct 1420644 CGTGACAACATTCAGGGTATCACCAAGCCCGCTATCCGCCGTCTCGCACGTCGTGGTGGT 1420585
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
|| |||||| |||| || || |||| ||||||| || | ||| | ||||||||||||
Sbjct 1420584 GTGAAGCGTATCTCCGGCCTGATCTACGAAGAGACGCGAGGTGTGCTCAAGATCTTCCTC 1420525
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| |||| |||| | || ||| ||||||||||| || || ||||| ||||||
Sbjct 1420524 GAGAACGTGATCCGTGATTCGGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACC 1420465
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| | ||| ||||||| || |||| || ||||| | | | || ||||| ||
Sbjct 1420464 TCGCTCGATGTCGTCTACGCCCTGAAGCGATCCGGCCGAACGCTCTACGGTTTCGG 1420409
Score = 159 bits (176), Expect = 5e-35
Identities = 177/236 (75%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || |||||||| || ||||||||||| || || || ||||| || |||||||||||
Sbjct 1342970 CGTGACAACATCCAGGGTATCACCAAGCCCGCCATTCGCCGTCTCGCACGTCGTGGTGGT 1343029
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
|| |||||| |||| || || |||| ||||||| || | ||| | ||||||||||||
Sbjct 1343030 GTGAAGCGTATCTCCGGCCTGATCTACGAAGAGACGCGAGGTGTGCTCAAGATCTTCCTC 1343089
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| |||| || | || ||| ||||||||||| || || ||||| ||||||
Sbjct 1343090 GAGAACGTCATCCGCGACTCGGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACC 1343149
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| | ||| ||||||| || |||| || ||||| | | | || ||||| ||
Sbjct 1343150 TCGCTCGATGTCGTCTACGCCCTGAAGCGATCCGGCCGAACGCTCTACGGTTTCGG 1343205
>seq28
Length=3235273
Score = 158 bits (174), Expect = 2e-34
Identities = 155/200 (78%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| ||||||||||| || ||||||||||| || ||||| ||||| || |||||||||||
Sbjct 1248752 CGCGATAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCACGTCGTGGTGGT 1248693
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| |||| || | |||| || |||| ||| | ||| | ||||||||||||
Sbjct 1248692 GTCAAGCGTATCTCGGGCCTCATCTACGAGGAGACTCGAGGTGTGCTCAAGATCTTCCTC 1248633
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| |||| ||| | || ||| ||||| ||||| || || ||||| |||||
Sbjct 1248632 GAGAACGTCATCCGTGACTCGGTCACCTACACCGAACACGCCAAGCGCAAGACGGTCACT 1248573
Query 16637 TCCATGGATATCGTCTATGC 16656
|| | ||| ||||||| ||
Sbjct 1248572 TCGCTCGATGTCGTCTACGC 1248553
Score = 158 bits (174), Expect = 2e-34
Identities = 155/200 (78%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| ||||||||||| || ||||||||||| || ||||| ||||| || |||||||||||
Sbjct 1298525 CGCGATAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCACGTCGTGGTGGT 1298584
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| |||| || | |||| || |||| ||| | ||| | ||||||||||||
Sbjct 1298585 GTCAAGCGTATCTCGGGCCTCATCTACGAGGAGACTCGAGGTGTGCTCAAGATCTTCCTC 1298644
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| |||| ||| | || ||| ||||| ||||| || || ||||| |||||
Sbjct 1298645 GAGAACGTCATCCGTGACTCGGTCACCTACACCGAACACGCCAAGCGCAAGACGGTCACT 1298704
Query 16637 TCCATGGATATCGTCTATGC 16656
|| | ||| ||||||| ||
Sbjct 1298705 TCGCTCGATGTCGTCTACGC 1298724
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79075161599106
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |