Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015505.1_202016-12- 23] 42 sequences; 25,806,628 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq26 109 1e-18 seq24 100 6e-16 seq37 91.5 3e-13 >seq26 Length=2192579 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 ||| || | || ||||| ||||| ||||| || ||||| ||||| || |||| |||||| Sbjct 1906960 GGTATCGTCGGCCCCAACGGTGCCGGTAAATCGACCCTGATCAAGCTCTTGACGGGCGAG 1907019 Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 ||| | || || || || |||||| |||||| |||| | || ||||| || Sbjct 1907020 ACCGTGCCCGACGAAGGCAAGGTCGAGAAGCACCCCAACTTGCGTGTAGCGTACGTGGCC 1907079 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 || ||||| ||||||||||||||| | ||||| || | ||| | | || ||||| || Sbjct 1907080 CAACACGCGTTCCACCACATCGAGGAGCACCTCGAGAAGACGGCGATGCAGTACATCCAA 1907139 Query 280350 TGGCGCTA 280357 ||||| || Sbjct 1907140 TGGCGTTA 1907147 >seq24 Length=1584903 Score = 100 bits (110), Expect = 6e-16 Identities = 250/380 (66%), Gaps = 0/380 (0%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 || || ||| |||||||| | || || |||||| | || | ||||||||||||| Sbjct 561471 GATTTTATCAACAAGGAGTTGATCCTCTTCTCGATGGCCGACAATGTGCGTTCTATTCCC 561530 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 || | ||||| ||||||| || || ||| || | || | |||||||| Sbjct 561531 TCTGTCATTGATGGGTTCAAGCCGGGTCAACGCAAGGTCTTGTTCGGTTGCTTCAAGCGC 561590 Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697 || || ||||| || ||||||| || || ||||| || |||| || | Sbjct 561591 AAATTGACGCAAGAGATCAAGGTCGGACAATTGGGCGGTTACGTCGCCGAGCACTCGGCG 561650 Query 218698 TACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTG 218757 |||||||||||||| |||| |||| || |||| | || |||| || | | ||| Sbjct 561651 TACCATCACGGTGAAATGAGTTTGCAAGGCACCATCATCGGTCTGGCGCAACAGTTTGTA 561710 Query 218758 GGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGT 218817 || |||||| | ||| | || ||| |||||||| |||||| | ||| | ||| Sbjct 561711 GGGTCCAACAACCTCAACATTCTCGACCCGAACGGTCAATTTGGTACGCGTTTGCAAGGT 561770 Query 218818 GGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAG 218877 || || || ||||| || | || |||||||| || |||| || | ||||| Sbjct 561771 GGTAAAGACGCGGCTTCGGCTCGTTACATCTTTACGAACGTGTCATCCATCACGCGTAGC 561830 Query 218878 GTGTTCAATCAGGCCGATGA 218897 || ||| ||| || ||||| Sbjct 561831 GTTTTCCATCCCGCTGATGA 561850 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||| || |||| ||||||||| Sbjct 680037 AGCCCGGTTAGCTCAGTCGGTAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAG 679978 Query 142563 CCCCACATCGGGC 142575 |||| ||| |||| Sbjct 679977 CCCCGCATTGGGC 679965 Score = 89.7 bits (98), Expect = 1e-12 Identities = 189/277 (68%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896 ||||| |||||| |||| || ||||| || || |||| || | | ||||| || Sbjct 560787 TGCACACTCATCTTGACCGAAGGAGATTCCGCCAAGGCGCTCGCCGTCTCGGGTCTGGCT 560846 Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956 || || ||||| || | |||||| ||||||| | || || ||||| ||||||||||| Sbjct 560847 GTCGTCGGTCGAGACAACTATGGTGTCTTCCCTTTGCGAGGAAAGCTACTCAACGTGCGT 560906 Query 217957 GATGCCTCGGTTTCAAGCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAATCCT 218015 || || ||| |||| | || | ||||| |||||| || |||||||| ||| | Sbjct 560907 GAAGCGGCGG-GCAAAGCCCTCCTCGACAATGCCGAGATTCAAGCGATCAAGCAGATCTT 560965 Query 218016 GGGTCTTCAGGTTGGAAAGACTTACAAGGATG-CGTCATCTCTGCGTTATGGCTCTGTCA 218074 ||||| ||| || || ||||| || | || | || || ||||| ||| ||| Sbjct 560966 AGGTCTGCAGCAGGGCAAAGTTTACACCGACGTCGAC-TCGCTCCGTTACGGCAAGCTCA 561024 Query 218075 TGCTTATGACTGATGCTGATGTTGACGGGTCCCACAT 218111 || | ||| | ||| ||| || || || ||||| Sbjct 561025 TGATCATGGCCGATCAAGATCACGATGGATCGCACAT 561061 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||| || |||| |||||||||| Sbjct 693186 GCCCGGTTAGCTCAGTCGGTAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 693245 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 693246 CCCGCATTGGGC 693257 >seq37 Length=1030275 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || ||||| ||||| |||||||||||||| || | | || ||||| || | Sbjct 775527 GGCTCGCTGTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCCATCCTGTTCGAG 775586 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| | || |||| || ||||| || |||||| ||||| ||||| |||||| Sbjct 775587 GCCGATATTCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTTAACGTCGCCTGG 775646 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | | |||||| || |||| || | ||| |||| ||||| |||||||| Sbjct 775647 CTCGAGAACTACCTCACGTCGCTGACGACGTGCACGTCCATCATCGTCTCGCACGACTCG 775706 Query 279879 GGCTTCCT 279886 |||||||| Sbjct 775707 GGCTTCCT 775714 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || ||||| ||||| |||||||||||||| || | | || ||||| || | Sbjct 782051 GGCTCGCTGTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCCATCCTGTTCGAG 781992 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| | || |||| || ||||| || |||||| ||||| ||||| |||||| Sbjct 781991 GCCGATATTCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTTAACGTCGCCTGG 781932 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | | |||||| || |||| || | ||| |||| ||||| |||||||| Sbjct 781931 CTCGAGAACTACCTCACGTCGCTGACGACGTGCACGTCCATCATCGTCTCGCACGACTCG 781872 Query 279879 GGCTTCCT 279886 |||||||| Sbjct 781871 GGCTTCCT 781864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836246895322