Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015505.1_202016-12- 23] 42 sequences; 25,806,628 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq25 376 5e-99 seq39 129 1e-24 seq24 87.8 3e-12 >seq25 Length=1823320 Score = 376 bits (416), Expect = 5e-99 Identities = 869/1295 (67%), Gaps = 32/1295 (2%) Strand=Plus/Minus Query 244391 TCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCG 244450 |||| ||||||| ||||||||||||||||||| |||||| | | ||| |||| | Sbjct 22066 TCGATCGCGGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTTGCGCGCCTCGGGT 22007 Query 244451 CAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCG 244510 | ||| || || ||| |||||| ||||||| || || ||||| ||||||||| Sbjct 22006 GAATCGAACGGCATCGCCAAGGCCATGAATGCGTCGGCGAGACCTTGCACTCCGATGCCG 21947 Query 244511 ATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCG 244570 ||||| | ||| || ||||||| || ||| |||||||| |||| |||| Sbjct 21946 ATGGGGCGGTGGCGGAAGTTGGAGTTTTGCGCCTCGATGACGGGGTAGTAGTTAACGTCA 21887 Query 244571 ATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCG 244630 || | ||| | |||| | || | |||||| ||| |||| || |||||| Sbjct 21886 ATGATGCGGTTCAAGTTGAAAGCGACGACCTTGACGACCTCGTGCAGCTTCTTGAAGTCG 21827 Query 244631 TACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCC 244690 ||| || | | || || ||| ||| ||| || | ||| |||| Sbjct 21826 TACACGCCG---TTCT------TGATGAAGCTCGGCAACGCGAT-----CGA----GGCC 21785 Query 244691 AGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTA 244750 | |||||||||||| ||| |||| || ||||| || || |||||||| ||||| Sbjct 21784 AAGTTGCAGACGGCGCACTCGTCCGGCGCGGAGTACTCGATGATTTCGGTGCACAGGTTC 21725 Query 244751 CTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAG 244810 ||||||| ||||| |||| || || || || || ||| ||||||||||||| Sbjct 21724 GACGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTCTTGTTTGCGGCGTCCTTGTAG 21665 Query 244811 AGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTCCCT 244869 |||||||| || ||||| |||| |||||| |||| | ||| || ||| || | Sbjct 21664 AGCATGAACGGGTTGCCGGTTTCGACCTGGGCCTCGAGAATCGC-GTACCAAAGCTTTTG 21606 Query 244870 AGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAA 244929 || || |||| | || |||||| ||||| | ||||||| ||| Sbjct 21605 CGCGGGGATCGTCTTCTTGGCGCGGCCCTCCTTTTCGTATTTCTCGAACAGGGCGCGGAA 21546 Query 244930 CTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTC 244989 ||| ||| | || |||| ||||||||| || ||||| | || ||| || Sbjct 21545 CTCTTCGCCATAAACTTCGTGGAGGCCGGGGGCTTCGGCGGGGCAGAACAGGGGCCAGTC 21486 Query 244990 GCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTC 245049 |||| || ||| ||| | || ||||||||| |||||||||||||| || |||||| || Sbjct 21485 GCCGGCGGCCTCGACTCGCTCCATGAAGAGATCGGGGATCCAGAGCGCAAAGAAGAGATC 21426 Query 245050 CCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTC 245109 | | | || ||| ||| |||||| | || |||| || ||||||||||| Sbjct 21425 ACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAACTCAAAGACGTC 21366 Query 245110 GACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTC 245169 | ||||||| ||||| | ||||| |||| ||| ||||| ||||||||||| || ||||| Sbjct 21365 GGCGTGCCAAGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTTGGTC 21306 Query 245170 CACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCC 245229 || | | || |||| ||| || || | || || |||||||| |||| ||| Sbjct 21305 GACGTAGCGCGCGGTATTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAGTAGCC 21246 Query 245230 GTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCC 245289 ||| ||||| |||||| | ||| | | | || |||| |||| || || | || Sbjct 21245 GTTCGTGCCGGCGATGTAAGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCGATACC 21186 Query 245290 GCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCT 245349 |||||| |||||||||||| ||||| |||||| ||||| ||||| || || Sbjct 21185 ACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGCCTTCGATCGA 21126 Query 245350 GTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTT 245409 || |||||| ||| ||| ||||| || || ||||| || | || | | | ||| Sbjct 21125 ATCATCCTTCATCGTGACCAGGAAGCACGACGAAAGCTGCGGGTGAGGCGTTCCGGCGTT 21066 Query 245410 GAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAG 245469 ||| || || || |||||||||||||||||| ||| | || ||||| ||| | Sbjct 21065 GAAGAGTGTCGGCGAGGCGTGGGTAAAGTAGCGCTCCGACATGAGGTTGTACGACTGCA- 21007 Query 245470 CAGA-GCG-TCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTG- 245526 ||| ||| ||||||| || |||||||| | |||| | |||||| |||| || Sbjct 21006 -AGACGCGCTCGATGTCGTGACCGTGGATGCCGACGGCGACGCGCATGAGCATGTGTTGC 20948 Query 245527 GGGCGTCTCGATGGGTCCCTCGGGTCCCT--TGAGCATGTAGGAGCGCTCGAGCGTCTTG 245584 || ||| ||| | | || | ||| | |||| || |||||||||||||||||| Sbjct 20947 GGTCGT-TCG--GCGACCTTGCCGTCGATGCGAAGCAAATACGAGCGCTCGAGCGTCTTG 20891 Query 245585 AACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGCGTCGAGTCTCTCG 245644 || |||||||| |||||| || ||| | || | ||||| || ||| | ||| Sbjct 20890 AAGCCAAAGTAGTTGTAGCCGAAATCGCGATCGTAGATAACGGCGCTGTTGAGGCGGTCG 20831 Query 245645 GCG-TGCTTCTGACTGACCTCGTAAAACTTTTGCG 245678 ||| || ||| |||||||||| || ||||| Sbjct 20830 GCGTTGGCCATGA-TGACCTCGTATGTCTCTTGCG 20797 Score = 84.2 bits (92), Expect = 4e-11 Identities = 170/252 (67%), Gaps = 13/252 (5%) Strand=Plus/Minus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| |||||| || | ||||||||||| || | || |||||||||||| || || Sbjct 22918 ACGGTGAACTTGATCGCCCCGACGGCGGCCCGTGTGCGCAAGTAGTACATGCCCGTTTTC 22859 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 ||||| | |||| ||| || |||||| | ||| || | | |||| | Sbjct 22858 AGTCCTCGCTTCCAGCCGTAGAAGTGCATCGACGTGAGTTGCGCCATC-----------G 22810 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 ||| |||| ||| || |||||| || || |||||||| ||||| | || || Sbjct 22809 TCGGGCTCG-ACAAGTGGATGTTGAGCGATTGCGACTGGTCGATGAAGGCACCTCGGTCG 22751 Query 243917 GCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTG 243976 |||| || | |||| | ||| || || | ||| | | ||||||||||||| |||| Sbjct 22750 GCGGACAAGTCAATGATGGTCTTTTGCGAGAGCTCCCAAACGGTCTTGTAGATGGCCTTG 22691 Query 243977 AGGT-GCTCGGG 243987 || | ||||||| Sbjct 22690 AGATCGCTCGGG 22679 >seq39 Length=984724 Score = 129 bits (142), Expect = 1e-24 Identities = 189/263 (72%), Gaps = 11/263 (4%) Strand=Plus/Plus Query 42744 GGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTC 42803 ||| | ||||| |||||||||||||||||| || | | |||||||||| | |||||| Sbjct 93917 GGCTCGTTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGCTTGATGCCCGGATTGACCTTC 93976 Query 42804 TCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 || ||||| |||||| | |||||||| || || | |||||||| |||||| ||||| Sbjct 93977 TCCAACGAGCTCATCTCGCGTGACGAGGGCCTCCACACCGACTTTGCTTGCCTCTTGTTC 94036 Query 42864 TCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCG-GGC---CATCATCACGGA 42919 || ||||||| || ||| |||| || ||| ||| |||||||| ||| Sbjct 94037 TC---CCACCTCGAGC-GAAGACCTC---ACCCCGACACCGTGGCGCTCATCATCAAGGA 94089 Query 42920 GGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCAT 42979 ||||||||| ||||| ||||| ||| | || || | || ||| || ||||||| Sbjct 94090 GGCCGTGGAAATCGAAAAGGAATTCTTGACCGAGGCTCTTCCCTGCGGTTTGATCGGCAT 94149 Query 42980 GAACCACGACCTCATGTGCAAGT 43002 ||| | ||||||||| ||| Sbjct 94150 GAATGCGAAGCTCATGTGCCAGT 94172 >seq24 Length=1584903 Score = 87.8 bits (96), Expect = 3e-12 Identities = 172/247 (70%), Gaps = 13/247 (5%) Strand=Plus/Minus Query 42741 TCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCAC 42799 || ||| |||||||||||||||| ||||||||| | ||| || ||||| || ||| | Sbjct 311978 TCAGGCTCCTTCGCCTCCATCTTTTGGCTCAAGAAACGAGGCCTC-ATGCCTGGCCTCTC 311920 Query 42800 CTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCT 42859 ||||| ||||| ||||| | ||||| || || |||| || || || ||| | Sbjct 311919 TTTCTCCAACGAGCTCATTTCGCGCGACGAAGGTCTTCATACCGAATTCGCGGTGCTCTT 311860 Query 42860 GTTCTCGAGCCACCTCAGGCACAAGCCCTCG--AAGGAGCGGGTC--CGGGCCATCATCA 42915 |||| ||||| || | || || || | ||||| || | ||| ||| | | Sbjct 311859 GTTC---AGCCATCTGAA-CAAGAGACCAGGTCAAGGATTGGTGCATCGG---ATCGTGA 311807 Query 42916 CGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCG 42975 |||||| || || ||||||||||| ||| | || || | ||||||||| | ||| | | Sbjct 311806 AGGAGGCGGTTGATATCGAGAAGGAATTCTTGACCGAGGCTCTGCCCGTGGCGCTGATTG 311747 Query 42976 GCATGAA 42982 | ||||| Sbjct 311746 GTATGAA 311740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338704221920