Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015505.1_202016-12- 23] 42 sequences; 25,806,628 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq25 188 9e-43 seq24 100 3e-16 seq39 87.8 2e-12 >seq25 Length=1823320 Score = 188 bits (208), Expect = 9e-43 Identities = 561/856 (66%), Gaps = 11/856 (1%) Strand=Plus/Minus Query 114470 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 114529 ||||| || |||| || || || | | ||| ||| | | |||||| || ||||| Sbjct 21796 GCGATCGAGGCCAAGTTGCAGACGGCGCACTCGTCCGGCGCGGAGTACTCGATGATTTCG 21737 Query 114530 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 114589 || |||| || || ||| || ||||| | ||||||||| || || || |||| Sbjct 21736 GTGCACAGGTTCGACGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTCTTGTTTGCG 21677 Query 114590 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 114649 || |||||||| |||||| | || | || || || |||| || |||||| || | | Sbjct 21676 GCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTCGACCTGGGCCTCGAGAATCGCGTAC 21617 Query 114650 CAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 114708 || | | | ||| | || | || ||||| || ||||||| ||||| || | | Sbjct 21616 CAAAGCTTTTGCG-CGGGGATCGTCTTCTTGGCGCGGCCCTCCTTTTCGTATTTCTCGAA 21558 Query 114709 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 114768 ||||| |||||||| || | || ||| || || || | | |||||||| Sbjct 21557 CAGGGCGCGGAACTCTTCGCCATAAACTTCGTGGAGGCCGGGGGCTTCGGCGGGGCAGAA 21498 Query 114769 GAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGC 114828 || | ||| | || | |||| || |||| ||||||||| || ||||||||||| || Sbjct 21497 CAGGGGCCAGTCGCCGGCGGCCTCGACTCGCTCCATGAAGAGATCGGGGATCCAGAGCGC 21438 Query 114829 TGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 114888 |||||||||| ||| ||| |||| || | || || || || | |||| || Sbjct 21437 AAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAA 21378 Query 114889 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACG 114945 || | || || |||||||| || || ||||| | ||||| | || ||| Sbjct 21377 CTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTT 21318 Query 114946 ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACC 115005 ||| | |||| || || | ||| || || | || || ||||| || | ||| || Sbjct 21317 GCCACCTTGGTCGACGTAGCGCGCGGTATTGTTGTAGACACGGAGCATGGGGACGATGCC 21258 Query 115006 ATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCATGGATG 115063 | || | ||| || || || ||| || ||| | | || | || | |||||| Sbjct 21257 GTTCGAGTAGCCGTTCGTGCCGGCGATGTAAGAGCC--GGTCGCGCGGATGTTGTGGATG 21200 Query 115064 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 115123 || ||| ||||| || || ||| ||||| |||||||| | |||| || ||||| Sbjct 21199 CTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAG 21140 Query 115124 ATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTT 115183 || || |||||||| ||| |||| | | || |||||||| ||| | || || Sbjct 21139 ATGCCTTCGATCGAATCATCCTTCATCGTGACCAGGAAGCACGACGAAAGCTGCGGGTGA 21080 Query 115184 GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTA 115243 || || || ||||||||||| || || | |||||| | || | | ||||| Sbjct 21079 GGCGTTCCGGCGTTGAAGAGTGTCGGCGAGGCGTGGGTAAAGTAGCGCTCCGACATGAGG 21020 Query 115244 TCGTAGGTCTCCAAGACG-GCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCAT 115302 | ||| | || ||||||| || | ||||| | ||||| || |||| | ||| ||||| Sbjct 21019 TTGTACGACTGCAAGACGCGCTCG-ATGTCGTGACCGTGGATGCCGACGGCGACGCGCAT 20961 Query 115303 AAACATGTATTGGGGT 115318 | ||||| ||| ||| Sbjct 20960 GAGCATGTGTTGCGGT 20945 >seq24 Length=1584903 Score = 100 bits (110), Expect = 3e-16 Identities = 298/451 (66%), Gaps = 18/451 (4%) Strand=Plus/Minus Query 172577 TTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTGTGAA 172636 ||||| | ||| || | |||| | || | || | ||| |||||||| ||||| || Sbjct 561112 TTGAGCAAGGAAGGGAACCAGTAATCGAGGAAGTTGATGATCAGACCCTTGATGTGCGAT 561053 Query 172637 CCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAACATCT 172696 ||||||| ||| ||| | ||| ||||| ||| || || || ||| | || || Sbjct 561052 CCATCGTGATCTTGATCGGCCATGATCATGAGCTTGCCGTAACGGAGCGAGTCGACGTCG 560993 Query 172697 TGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTTT 172756 || | || ||||| || ||||| ||||||| ||||| | ||||| ||| || | Sbjct 560992 GTGTAAACTTTGCCCTGCTGCAGACCTAAGATCTGCTTGATCGC-TTGAA-TCTCGGCAT 560935 Query 172757 GATGT-GAGTTGCGCCA---CTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGG 172812 ||| ||| | || | | || || || || || ||| || || | ||| Sbjct 560934 --TGTCGAGGAGGGCTTTGCCCGCCGCTTCACGCACGTTGAGTAGCTTTCCTCGCAAAGG 560877 Query 172813 GAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGC 172872 ||| ||||| |||| || ||||| || |||| ||||| | || ||||| | ||| || Sbjct 560876 GAAGACACCATAGTTGTCTCGACCGACGACAGCCAGACCCGAGACGGCGAGCGCCTTGGC 560817 Query 172873 GGAATCACCCTCCGTCACGATGAGCGTACACTTT--CCAGATTGTGCCGTCCCCGCCTTG 172930 |||||| || || |||| |||||| || ||||| || | | | ||| || || || Sbjct 560816 GGAATCTCCTTCGGTCAAGATGAGTGTGCACTTGGACCCGTTCCT--CGTACCAGCGTTA 560759 Query 172931 TTCGCATCGTCCAACTTGGGAATACCAGTAATTTTGGA---CTTGCGGGCACCATCTGTC 172987 |||||||| || | |||| | ||| || || || |||| | || || ||| Sbjct 560758 TTCGCATCTTCGAGCTTGACGAGACCCGTGATACGCGATCGCTTGTGT---CCGTCCGTC 560702 Query 172988 TTCTTGAGTTCCTTCATCTCCTTGAACTTGG 173018 |||||||| || || ||||||||||| Sbjct 560701 TTCTTGAGCATCTGGTCCTGCTTGAACTTGG 560671 >seq39 Length=984724 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 8526 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTTAGGGAATCCCCTCAAAATGAGGAG 8585 || || || || |||||||| ||| || || || || ||||||| ||| | Sbjct 270939 TACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTCCGAGACG 270880 Query 8586 ACACCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTG 8645 || |||||||| || || || ||| || ||| | ||| | || ||| |||| Sbjct 270879 ACCCCCTTCTACCCTCGTTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTGGATCGTC 270820 Query 8646 AAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAG 8705 ||||| ||||| || || || | | | |||||| |||||| ||||||||||||||| Sbjct 270819 AAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAACCACGAG 270760 Query 8706 TCACCCCGTCGTGGCC 8721 || ||||||||||||| Sbjct 270759 TCCCCCCGTCGTGGCC 270744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353286389360