Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015505.1_202016-12- 23] 42 sequences; 25,806,628 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq25 152 6e-32 seq17 145 9e-30 seq24 131 2e-25 seq39 104 3e-17 >seq25 Length=1823320 Score = 152 bits (168), Expect = 6e-32 Identities = 517/798 (65%), Gaps = 17/798 (2%) Strand=Plus/Plus Query 111619 ACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGA 111678 ||||| ||||||| ||||| |||| ||||| || | || || || || ||| || Sbjct 20953 ACATGCTCATGCGCGTCGCCGTCGGCATCCACGGTCACGACATCGAGCGCGTCTTGCAGT 21012 Query 111679 CATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCT 111737 | ||| || ||||| | | || || | |||||| | || || ||||||||||| Sbjct 21013 CGTACAACCTCATGTCGGAGCGCTACTTT-ACCCACGCCTCGCCGACACTCTTCAACGCC 21071 Query 111738 GGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATC 111797 || || || || || | || || ||||| | | | ||||| ||||| ||| Sbjct 21072 GGAACGCCTCACCCGCAGCTTTCGTCGTGCTTCCTGGTCACGATGAAGGATGATTCGATC 21131 Query 111798 AATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATC 111857 | ||||| |||| ||| |||| || || | ||||| ||| || ||||||||| Sbjct 21132 GAAGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACCGCCGGTGGTATC 21191 Query 111858 GGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAA 111917 || || |||||| | || | || | | ||| || || || || || | Sbjct 21192 GGTTTGAGCATCCACAACATCCGCGCGACCGGCTCTTACATCGCCGGCACGAACGGCTAC 21251 Query 111918 TCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAA 111977 || | || || | || ||||| || || | ||| || |||||||| || ||||| Sbjct 21252 TCGAACGGCATCGTCCCCATGCTCCGTGTCTACAACAATACCGCGCGCTACGTCGACCAA 21311 Query 111978 GCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGAT 112031 | ||| ||||| | ||| | |||| |||| || ||||| |||||||| || Sbjct 21312 GGTGGCAACAAGCGTCCC---GGAGCCTTCGCGATCTACCTCGAGCCTTGGCACGCCGAC 21368 Query 112032 ATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGCGGTGCCGCG 112089 || | |||||||| || | || ||||| || | ||||| | |||| | || | Sbjct 21369 GTCTTTGAGTTCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAAGTCCGCGCT--CGTG 21426 Query 112090 ATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCA 112149 ||||||||| || |||||||| || |||||||||||| || |||| |||| ||| Sbjct 21427 ATCTCTTCTTTGCGCTCTGGATCCCCGATCTCTTCATGGAGCGAGTCGAGGCCGCCGGCG 21486 Query 112150 ATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGT 112209 | ||| | || || || || | | | || ||||| ||| ||| | || || |||| Sbjct 21487 ACTGGCCCCTGTTCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTTTATGGCGAAGAGT 21546 Query 112210 TTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTG 112269 | ||||| | | || ||||| | || | || || | |||| | || || | Sbjct 21547 TCCGCGCCCTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAGACGATCCCCGC-G 21605 Query 112270 CCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTT 112328 | | | | ||| | || |||||| || | || ||| || || | || | ||||| Sbjct 21606 CAAAAGCTTTGGTACGCGATTCTCGAGGCCCAGGTCGAAACCGGCAACCCGTTCATGCTC 21665 Query 112329 TACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCC 112388 ||||| |||||| ||| | || || |||||||| | || ||||||| || Sbjct 21666 TACAAGGACGCCGCAAACAAGAAATCGAACCAAAAGAACCTTGGCACGATCAAGTCGTCG 21725 Query 112389 AACCTCTGTACAGAAATC 112406 ||||| || || |||||| Sbjct 21726 AACCTGTGCACCGAAATC 21743 >seq17 Length=1685150 Score = 145 bits (160), Expect = 9e-30 Identities = 268/393 (68%), Gaps = 0/393 (0%) Strand=Plus/Plus Query 13592 CCGCATCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 13651 |||| |||| |||||||| | || ||| ||| ||| ||||| ||| | || ||| Sbjct 61167 CCGCTTCTACCAAGCCTCGACCTCCGAGTTGTATGGCAAGGTCGTCGAGACCCCTCAATC 61226 Query 13652 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 13711 |||| ||| ||||||||||| || || ||||||||| | ||| | || || Sbjct 61227 CGAGACGACGCCCTTCTACCCTCGTTCACCTTACGGAGTCGCCAAGTTGTACGCCTTCTG 61286 Query 13712 GCTCGTAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAA 13771 | |||| ||||| ||||||||||| |||| ||| || ||| ||| ||| | ||||| Sbjct 61287 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCTTGTTCAA 61346 Query 13772 CCATGAATCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTACCGAGGGTATCAA 13831 ||| || || ||| | || ||| ||||||||| | ||||||| || | | || Sbjct 61347 CCACGAGTCCCCGCGTCGTGGTCGTACCTTTGTGACGAGGAAGATTTCCCGAGCTGTCGC 61406 Query 13832 ACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGA 13891 | ||| | ||| || |||| | | | | | || ||| | | || || | || Sbjct 61407 CGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAACTTGGAGGCCAAGCGTGA 61466 Query 13892 TTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGC 13951 |||||| |||||| || || || || | ||||||| | ||||| || ||||| | Sbjct 61467 TTGGGGACACGCGCGCGATTACGTCGAGGGTATGTGGATGATGCTGCAGCAAGACACCCC 61526 Query 13952 CGACGAATATGTAGTAGCAACGGGTGAGACCCA 13984 |||||| | ||| | || |||||||||||||| Sbjct 61527 CGACGACTTTGTCCTCGCGACGGGTGAGACCCA 61559 >seq24 Length=1584903 Score = 131 bits (144), Expect = 2e-25 Identities = 236/337 (70%), Gaps = 10/337 (3%) Strand=Plus/Minus Query 176723 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 176782 |||| || |||||||||||||| || || |||| ||| ||| | |||||||||||| Sbjct 561079 TTGATGATCAGACCCTTGATGTGCGATCCATCGTGATCTTGATCGGCCATGATCATGAGC 561020 Query 176783 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 176842 || || || ||| | || || || | || ||||| || ||||| |||||| Sbjct 561019 TTGCCGTAACGGAGCGAGTCGACGTCGGTGTAAACTTTGCCCTGCTGCAGACCTAAGATC 560960 Query 176843 TTCTTGAGATCG-TTGAACTCTTGGT-TTGATGTG-AGCTGTGTGACAGAGGCATCACGA 176899 | ||||| ||| ||||| ||| || ||| | | || | || | | || ||||| Sbjct 560959 TGCTTGA--TCGCTTGAA-TCTCGGCATTGTCGAGGAGGGCTTTGCCCGCCGCTTCACGC 560903 Query 176900 ACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAG 176959 || || ||| || || | |||||||||||| |||| || ||||| || |||| Sbjct 560902 ACGTTGAGTAGCTTTCCTCGCAAAGGGAAGACACCATAGTTGTCTCGACCGACGACAGCC 560843 Query 176960 AGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACACTTG 177019 ||||||| || ||||||| || || ||||| || || |||| ||||||||| |||||| Sbjct 560842 AGACCCGAGACGGCGAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGTGTGCACTTG 560783 Query 177020 --CCAGATTGTGCCGTACCCGCCTTGTTCGCATCATC 177054 || | | | |||||| || || |||||||| || Sbjct 560782 GACCCGTTCCT--CGTACCAGCGTTATTCGCATCTTC 560748 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 102222 TCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGC 102281 || || |||||| | | || | |||||||||||| ||||| |||||||| || |||| Sbjct 311978 TCAGGCTCCTTCGCCTCCATCTTTTGGCTCAAGAAACGAGGCCTCATGCCTGGCCTCTCT 311919 Query 102282 TTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG 102335 |||||||||||||| || || || ||||| || || || || || |||||| Sbjct 311918 TTCTCCAACGAGCTCATTTCGCGCGACGAAGGTCTTCATACCGAATTCGCGGTG 311865 >seq39 Length=984724 Score = 104 bits (114), Expect = 3e-17 Identities = 160/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 13592 CCGCATCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 13651 |||| |||| || ||||| | || ||| ||| || ||||| ||| | || || Sbjct 270946 CCGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTC 270887 Query 13652 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 13711 |||| ||| ||||||||||| || ||| |||||||||| | ||| | || || Sbjct 270886 CGAGACGACCCCCTTCTACCCTCGTTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTG 270827 Query 13712 GCTCGTAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAA 13771 | |||| ||||| ||||||||||| |||| ||| || ||| ||| ||||||||||| Sbjct 270826 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAA 270767 Query 13772 CCATGAATCACCGAGACGAGG-TGCAGACTTTGTGACCATGAAGAT 13816 ||| || || || | || || ||| |||||| |||| ||||| Sbjct 270766 CCACGAGTCCCCCCGTCGTGGCCGCA-CCTTTGTCACCAGAAAGAT 270722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742074110240