Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015505.1_202016-12- 23] 42 sequences; 25,806,628 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq25 228 1e-53 seq20 129 7e-24 >seq25 Length=1823320 Score = 228 bits (252), Expect = 1e-53 Identities = 287/393 (73%), Gaps = 17/393 (4%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||||||||||||||| || | ||| |||| ||||||||||| |||| |||||| || Sbjct 21310 TGGTCGACGTAGCGCGCGGTATTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAG 21251 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||| ||||| || | ||| | ||||| ||||| | ||||| | || ||| Sbjct 21250 TAGCCGTTCGTGCCGGCGATGTAAGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCG 21191 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| | ||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 21190 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGCCTTCG 21131 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 ||||| || ||||||| || || ||||||||||| |||||||| | ||| ||| Sbjct 21130 ATCGAATCATCCTTCATCGTGACCAGGAAGCACGACGAAAGCTGCGGGTGAGGCGTTCCG 21071 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA-GGT 1630364 ||||||||||| || |||| || ||| || | || ||||||| || ||| | Sbjct 21070 GCGTTGAAGAGTGTCGGCGAGGCGTGGGTAAAGTAGCGCTCCGACATGAGGTTGTACGAC 21011 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 || || |||||| || | |||| | || | | ||||| |||||| Sbjct 21010 TGCAAG-ACGCGC------------TCGATGTCGTGA---CCGTGGATGCCGACGGCGAC 20967 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGAC 1630457 |||||||||||||| || || || ||| |||| Sbjct 20966 GCGCATGAGCATGTGTTGCGGTCGTTCGGCGAC 20934 Score = 129 bits (142), Expect = 7e-24 Identities = 289/440 (66%), Gaps = 2/440 (0%) Strand=Plus/Minus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGG 1628221 ||| || ||| |||||||||||||| | |||| | |||| || ||||||| ||||| | Sbjct 21750 ACTCGATGATTTCGGTGCACAGGTTCGACGACTTGATCGTGCCAAGGTTCTTTTGGTTCG 21691 Query 1628222 TGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCG 1628281 || ||| |||||||||||| ||||||| | || |||||| |||| ||| ||| Sbjct 21690 ATTTCTTGTTTGCGGCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTCGACCTGGGCCT 21631 Query 1628282 CGACGATGGCCGACCAGATCTGGCGCGCGGGCA-CGACAGTCCGCGCGCGGCCCTNNNNN 1628340 ||| || || |||| | || ||||||| | || | || |||||||||| Sbjct 21630 CGAGAATCGCGTACCAAAGCTTTTGCGCGGGGATCGTCT-TCTTGGCGCGGCCCTCCTTT 21572 Query 1628341 NNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCC 1628400 || | |||| || ||||| |||||||| || Sbjct 21571 TCGTATTTCTCGAACAGGGCGCGGAACTCTTCGCCATAAACTTCGTGGAGGCCGGGGGCT 21512 Query 1628401 TCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCA 1628460 |||| || || || || | ||||||||| ||| | | | || ||| ||||| || Sbjct 21511 TCGGCGGGGCAGAACAGGGGCCAGTCGCCGGCGGCCTCGACTCGCTCCATGAAGAGATCG 21452 Query 1628461 CACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTT 1628520 |||| || || | ||||| || || || ||| |||||||||||||||||||| Sbjct 21451 GGGATCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTG 21392 Query 1628521 TTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCG 1628580 ||||| || | || | | |||||||||||| ||||| |||||| || ||||| Sbjct 21391 CGAAGGTCCAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATCGCGAAGGCT 21332 Query 1628581 CCCTTGCGCTTGCCGCCGCC 1628600 || |||||| ||| || Sbjct 21331 CCGGGACGCTTGTTGCCACC 21312 Score = 122 bits (134), Expect = 1e-21 Identities = 173/241 (72%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 1626982 TGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCG 1627041 ||||||||||| |||| ||| || || |||||| || ||||||| ||||||||||| Sbjct 22924 TGGTCGACGGTGAACTTGATCGCCCCGACGGCGGCCCGTGTGCGCAAGTAGTACATGCCC 22865 Query 1627042 GTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGCG 1627101 || || || || || ||| ||||| |||||||||||||| || | ||||| | Sbjct 22864 GTTTTCAGTCCTCGCTTCCAGCCGTAGAAGTGCATCGACGTGAGTTGCGCCATCGTCGGG 22805 Query 1627102 -TCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCGC 1627160 ||| | ||| | ||||||||| || |||||||| ||| | || ||||| | Sbjct 22804 CTCGAC-AAGTGGATGTTGAGCGATTGCGACTGGTCGATGAAGGCACCTCGGTCGGCGGA 22746 Query 1627161 CATGTCGATGGTGACCCGGTTGGGCACCTCCCACACGGTCTTGAAGATGGCCTTGAGGTC 1627220 || ||| ||| || | | | | |||||| ||||||||| ||||||||||||| || Sbjct 22745 CAAGTCAATGATGGTCTTTTGCGAGAGCTCCCAAACGGTCTTGTAGATGGCCTTGAGATC 22686 Query 1627221 G 1627221 | Sbjct 22685 G 22685 Score = 100 bits (110), Expect = 3e-15 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCC-GTG 19111 ||||| || ||||| |||||||| ||||||| ||| || ||||| ||||| ||| Sbjct 1531394 ATCGGTGGTACGGTCACGTGCGTCATCCGCAACGCTCCGTTCGGTCTCGGAGAGCCTGTG 1531453 Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171 || |||||| | || ||| | |||||||||||||||||||| || || |||||||| Sbjct 1531454 -TTCGACAAGCTGGAAGCCCTCTTGGCCCACGCCATGCTGTCGATTCCCGCAACCAAGGG 1531512 Query 19172 ATTCGAGATTGG 19183 ||||||||||| Sbjct 1531513 TTTCGAGATTGG 1531524 Score = 91.5 bits (100), Expect = 2e-12 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067 ||||||| || ||||| ||||||| |||| || | | || || || || | Sbjct 1450964 TCGACGTTGTACGCAACCGCATCAAGGCTTTCGCCCAGAAAAAGGTCACACTCCCACCGG 1450905 Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127 | ||||||||| | ||||||||||||| ||||||| | || ||| |||||||| | Sbjct 1450904 GTCGCCACAAGCTCGTCATCCTCGACGAAGCCGACTCGATGACCCCGGGAGCCCAGCAAG 1450845 Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187 | || || || ||||||| | ||||||| || ||||| ||| | ||||||||| Sbjct 1450844 CGCTCCGCAGGACGATGGAAATCTTCTCCAACACCACCCGCTTCGCCTTTGCGTGCAACC 1450785 Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCAT 1574230 | | |||||||| | | |||||||| |||||||| Sbjct 1450784 AGAGCAACAAAATCATCGAGCCGATTCAAAGTCGATGCGCCAT 1450742 >seq20 Length=1821730 Score = 129 bits (142), Expect = 7e-24 Identities = 151/203 (74%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| ||| || ||| | | ||||| || || | ||||||||||||||||| || Sbjct 624155 GCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCGAGGTCTGGATCTCGCGCGACGAGA 624214 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | || ||||| |||| || ||| || | ||||||||| ||||||| |||| Sbjct 624215 TGGTCGACTTGCGGTTGT---AGCCCGCGAGCTTGGACGCCTCGGTGGCGATGCGCTCGA 624271 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || | |||||| |||||| ||||| || ||||| Sbjct 624272 AGATGTCGTTGACGAACGAGTTGAGGATCAACATCGCCTTGTTCGAGATACCGGTGTCGG 624331 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| |||||||| | ||||||| Sbjct 624332 GGTGGACCTGCTTCAACACCTTG 624354 Score = 129 bits (142), Expect = 7e-24 Identities = 151/203 (74%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| ||| || ||| | | ||||| || || | ||||||||||||||||| || Sbjct 674346 GCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCGAGGTCTGGATCTCGCGCGACGAGA 674287 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | || ||||| |||| || ||| || | ||||||||| ||||||| |||| Sbjct 674286 TGGTCGACTTGCGGTTGT---AGCCCGCGAGCTTGGACGCCTCGGTGGCGATGCGCTCGA 674230 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || | |||||| |||||| ||||| || ||||| Sbjct 674229 AGATGTCGTTGACGAACGAGTTGAGGATCAACATCGCCTTGTTCGAGATACCGGTGTCGG 674170 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| |||||||| | ||||||| Sbjct 674169 GGTGGACCTGCTTCAACACCTTG 674147 Score = 105 bits (116), Expect = 8e-17 Identities = 146/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || ||| ||| | | ||||| ||| || | ||| |||||||| |||| || Sbjct 308464 GCTTGGACAATTCTCCGGGGAGGATCAAGCGAACCGAGGTTTGGATCTCTCGCGACGAGA 308405 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | || ||||| |||| || ||| || | ||||||||| |||| || |||| Sbjct 308404 TGGTCGACTTGCGGTTGT---AGCCCGCGAGCTTGGATGCCTCGGTGGCGATACGCTCGA 308348 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || ||||| |||||| ||||| ||| ||||| Sbjct 308347 AGATGTCGTTGACGAACGAGTTGAGGATAAGCATCGCCTTGTTCGAGATACCCGTGTCGG 308288 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| || ||||| | ||| ||| Sbjct 308287 GGTGAACTTGCTTCAACACTTTG 308265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107135753283314