Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015505.1_202016-12- 23] 42 sequences; 25,806,628 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq13 123 2e-23 seq24 93.3 3e-14 seq25 91.5 1e-13 seq38 82.4 6e-11 >seq13 Length=462124 Score = 123 bits (136), Expect = 2e-23 Identities = 280/408 (69%), Gaps = 15/408 (4%) Strand=Plus/Plus Query 34204 GGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAG-CGT-GCCGTGAT 34261 || ||||| || || |||||||| |||| || || | | | ||| | ||| |||| | | Sbjct 372912 GGGGGGTTCTTAAGGATGAAGGTCGTGAGTTTGTG-GCGCA-TGTCGACGTTGCCGCGCT 372969 Query 34262 AACCGCATGCTTTGCAGCCCTGACAGATAATG--TTCTTTTTAGCGGACACGATGAGCTC 34319 |||||||| |||||| | || || ||| ||| | || | || |||||| || Sbjct 372970 TGCCGCATGCCTTGCAGTC---ACGGAGGATGAATTCGTCTTTGGTGAT--GATGAGTTC 373024 Query 34320 AGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAG 34379 || || ||||| | || || || | ||| |||||| |||||| | || |||| Sbjct 373025 CGTTTCGGGGTTTTTGCACGACGCGCATAGCACGAACTTGTCGATGAAGACGTCGAGCAA 373084 Query 34380 GTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATC 34439 ||| | | | | ||||| | ||||||||||||| | |||||| | | | || Sbjct 373085 GTCACGCAGACGATTCGTCTCGTGCGCGCCGTTGACGATGTAGCGTTCGGTCTCATCATT 373144 Query 34440 GACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACG 34499 || || ||| ||||| || |||||||| ||| |||| |||||||| | ||| || Sbjct 373145 GAAGGTCGCTTGGGCGCCGAGTTCGCACCCAAAGAACTTGGTCGGGTAGGACGACGGGCG 373204 Query 34500 -TCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCT 34558 | |||| || |||| || | ||||||| | |||||||||||||||||||| Sbjct 373205 ATTCAAG-GCTCGCGCGACATCAGCCATGTTGGGAAACACAGTCTTGATGCCGTTGCCGC 373263 Query 34559 TTCCTTCGACCTTGGCGCAGATGCG-CGGCATTTTGTAGCGGTAGAAC 34605 || |||| |||| ||| ||| ||||| ||||||||||||||| Sbjct 373264 GGCCCTCGATTTTGGTCAAGA-GCGAGGGCATCTTGTAGCGGTAGAAC 373310 >seq24 Length=1584903 Score = 93.3 bits (102), Expect = 3e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 110274 TGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGACG 110333 ||||||| || ||||| || | || ||||| ||||| ||| |||| ||| | || Sbjct 1347578 TGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 1347519 Query 110334 ATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAAC 110393 | || ||| | | || || ||||| ||||| |||||| | ||| || || | Sbjct 1347518 ACACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGC 1347459 Query 110394 AAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACA 110453 || | || || | ||| || || ||||| ||||||| | | || | || |||||||||| Sbjct 1347458 AACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAACA 1347399 Query 110454 TTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 | ||||| || || ||| | ||| ||||| | | ||||| || || Sbjct 1347398 TCCAAAAGGAGTCGACGCTCCACTTGGTGCTCCGCCTGCGTGGTGG 1347353 >seq25 Length=1823320 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || || |||||||| ||||| || |||| ||| || Sbjct 1053859 ATGCAAATCTTTGTCAAGACCTTGACCGGCAAGACCATCACGCTCGAGGTCGAGTCTTCA 1053800 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || |||||| ||||| || ||| | ||| || ||| Sbjct 1053799 GACACGATTGACAACGTCAAGACCAAGATTCAAGACAAGGAGGGCATTCCCCCAGACCAA 1053740 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || || | |||||| || || || ||||||| | | || | || ||||||||| Sbjct 1053739 CAACGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGTACGCTCGCAGATTACAAC 1053680 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || || || || | ||| ||||| Sbjct 1053679 ATCCAGAAGGAGTCGACCCTCCACTTGGTG 1053650 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||| || || |||||||| || || || |||| ||| | Sbjct 1294082 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 1294023 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || |||||| ||||| || ||| | ||| || ||| Sbjct 1294022 GACACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAA 1293963 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || || | |||||| || || || ||||||| | | || | || || |||||| Sbjct 1293962 CAACGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGCACGCTCGCCGACTACAAC 1293903 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 |||||||| || || || | ||| ||||||| Sbjct 1293902 ATTCAAAAGGAGTCGACCCTCCACTTGGTGTT 1293871 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||| || || |||||||| || || || |||| ||| | Sbjct 1294310 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 1294251 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || |||||| ||||| || ||| | ||| || ||| Sbjct 1294250 GACACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAA 1294191 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || || | |||||| || || || ||||||| | | || | || || |||||| Sbjct 1294190 CAACGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGCACGCTCGCCGACTACAAC 1294131 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 |||||||| || || || | ||| ||||||| Sbjct 1294130 ATTCAAAAGGAGTCGACCCTCCACTTGGTGTT 1294099 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||| || || |||||||| || || || |||| ||| | Sbjct 1294766 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 1294707 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || |||||| ||||| || ||| | ||| || ||| Sbjct 1294706 GACACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAA 1294647 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || || | |||||| || || || ||||||| | | || | || || |||||| Sbjct 1294646 CAACGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGCACGCTCGCCGACTACAAC 1294587 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 |||||||| || || || | ||| ||||||| Sbjct 1294586 ATTCAAAAGGAGTCGACCCTCCACTTGGTGTT 1294555 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || || |||||||| || || || |||| ||| | Sbjct 1296134 ATGCAAATCTTTGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 1296075 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || ||||| ||||| || ||| | ||| || ||| Sbjct 1296074 GACACGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAA 1296015 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || || | |||||| || || || ||||||| | | || | || || |||||| Sbjct 1296014 CAACGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGCACGCTCGCCGACTACAAC 1295955 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 |||||||| || || || | ||| ||||||| Sbjct 1295954 ATTCAAAAGGAGTCGACCCTCCACTTGGTGTT 1295923 >seq38 Length=1003587 Score = 82.4 bits (90), Expect = 6e-11 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 110275 GCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGACGA 110334 |||||| || ||||| ||| | || ||||| || || ||| |||| ||| | ||| Sbjct 148948 GCAAATCTTCGTCAAGACTCTTACAGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 149007 Query 110335 TACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACA 110394 || ||| | | || || ||||| ||||| |||||| | ||| || || || Sbjct 149008 CACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGCA 149067 Query 110395 AAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACAT 110454 | | || || | ||| || || ||||| ||||||| | | || | || ||||||||||| Sbjct 149068 ACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAACAT 149127 Query 110455 TCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || || | ||| |||| | | || ||||| || Sbjct 149128 CCAAAAGGAGTCGACCCTCCACTTGGTCCTCCGTCTCCGAGGTGG 149172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412841388676706