Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015505.1_202016-12-
23] 42 sequences; 25,806,628 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq13 123 2e-23
seq24 93.3 3e-14
seq25 91.5 1e-13
seq38 82.4 6e-11
>seq13
Length=462124
Score = 123 bits (136), Expect = 2e-23
Identities = 280/408 (69%), Gaps = 15/408 (4%)
Strand=Plus/Plus
Query 34204 GGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAG-CGT-GCCGTGAT 34261
|| ||||| || || |||||||| |||| || || | | | ||| | ||| |||| | |
Sbjct 372912 GGGGGGTTCTTAAGGATGAAGGTCGTGAGTTTGTG-GCGCA-TGTCGACGTTGCCGCGCT 372969
Query 34262 AACCGCATGCTTTGCAGCCCTGACAGATAATG--TTCTTTTTAGCGGACACGATGAGCTC 34319
|||||||| |||||| | || || ||| ||| | || | || |||||| ||
Sbjct 372970 TGCCGCATGCCTTGCAGTC---ACGGAGGATGAATTCGTCTTTGGTGAT--GATGAGTTC 373024
Query 34320 AGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAG 34379
|| || ||||| | || || || | ||| |||||| |||||| | || ||||
Sbjct 373025 CGTTTCGGGGTTTTTGCACGACGCGCATAGCACGAACTTGTCGATGAAGACGTCGAGCAA 373084
Query 34380 GTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATC 34439
||| | | | | ||||| | ||||||||||||| | |||||| | | | ||
Sbjct 373085 GTCACGCAGACGATTCGTCTCGTGCGCGCCGTTGACGATGTAGCGTTCGGTCTCATCATT 373144
Query 34440 GACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACG 34499
|| || ||| ||||| || |||||||| ||| |||| |||||||| | ||| ||
Sbjct 373145 GAAGGTCGCTTGGGCGCCGAGTTCGCACCCAAAGAACTTGGTCGGGTAGGACGACGGGCG 373204
Query 34500 -TCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCT 34558
| |||| || |||| || | ||||||| | ||||||||||||||||||||
Sbjct 373205 ATTCAAG-GCTCGCGCGACATCAGCCATGTTGGGAAACACAGTCTTGATGCCGTTGCCGC 373263
Query 34559 TTCCTTCGACCTTGGCGCAGATGCG-CGGCATTTTGTAGCGGTAGAAC 34605
|| |||| |||| ||| ||| ||||| |||||||||||||||
Sbjct 373264 GGCCCTCGATTTTGGTCAAGA-GCGAGGGCATCTTGTAGCGGTAGAAC 373310
>seq24
Length=1584903
Score = 93.3 bits (102), Expect = 3e-14
Identities = 156/226 (69%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 110274 TGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGACG 110333
||||||| || ||||| || | || ||||| ||||| ||| |||| ||| | ||
Sbjct 1347578 TGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 1347519
Query 110334 ATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAAC 110393
| || ||| | | || || ||||| ||||| |||||| | ||| || || |
Sbjct 1347518 ACACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGC 1347459
Query 110394 AAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACA 110453
|| | || || | ||| || || ||||| ||||||| | | || | || ||||||||||
Sbjct 1347458 AACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAACA 1347399
Query 110454 TTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
| ||||| || || ||| | ||| ||||| | | ||||| || ||
Sbjct 1347398 TCCAAAAGGAGTCGACGCTCCACTTGGTGCTCCGCCTGCGTGGTGG 1347353
>seq25
Length=1823320
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| |||||||| || || |||||||| ||||| || |||| ||| ||
Sbjct 1053859 ATGCAAATCTTTGTCAAGACCTTGACCGGCAAGACCATCACGCTCGAGGTCGAGTCTTCA 1053800
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || | | | | || || |||||| ||||| || ||| | ||| || |||
Sbjct 1053799 GACACGATTGACAACGTCAAGACCAAGATTCAAGACAAGGAGGGCATTCCCCCAGACCAA 1053740
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||| | || || | |||||| || || || ||||||| | | || | || |||||||||
Sbjct 1053739 CAACGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGTACGCTCGCAGATTACAAC 1053680
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482
|| || || || || || | ||| |||||
Sbjct 1053679 ATCCAGAAGGAGTCGACCCTCCACTTGGTG 1053650
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| || ||||| || || |||||||| || || || |||| ||| |
Sbjct 1294082 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 1294023
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || | | | | || || |||||| ||||| || ||| | ||| || |||
Sbjct 1294022 GACACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAA 1293963
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||| | || || | |||||| || || || ||||||| | | || | || || ||||||
Sbjct 1293962 CAACGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGCACGCTCGCCGACTACAAC 1293903
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484
|||||||| || || || | ||| |||||||
Sbjct 1293902 ATTCAAAAGGAGTCGACCCTCCACTTGGTGTT 1293871
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| || ||||| || || |||||||| || || || |||| ||| |
Sbjct 1294310 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 1294251
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || | | | | || || |||||| ||||| || ||| | ||| || |||
Sbjct 1294250 GACACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAA 1294191
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||| | || || | |||||| || || || ||||||| | | || | || || ||||||
Sbjct 1294190 CAACGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGCACGCTCGCCGACTACAAC 1294131
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484
|||||||| || || || | ||| |||||||
Sbjct 1294130 ATTCAAAAGGAGTCGACCCTCCACTTGGTGTT 1294099
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| || ||||| || || |||||||| || || || |||| ||| |
Sbjct 1294766 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 1294707
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || | | | | || || |||||| ||||| || ||| | ||| || |||
Sbjct 1294706 GACACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAA 1294647
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||| | || || | |||||| || || || ||||||| | | || | || || ||||||
Sbjct 1294646 CAACGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGCACGCTCGCCGACTACAAC 1294587
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484
|||||||| || || || | ||| |||||||
Sbjct 1294586 ATTCAAAAGGAGTCGACCCTCCACTTGGTGTT 1294555
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| |||||||| || || |||||||| || || || |||| ||| |
Sbjct 1296134 ATGCAAATCTTTGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 1296075
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || | | | | || || ||||| ||||| || ||| | ||| || |||
Sbjct 1296074 GACACGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAA 1296015
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||| | || || | |||||| || || || ||||||| | | || | || || ||||||
Sbjct 1296014 CAACGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGCACGCTCGCCGACTACAAC 1295955
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484
|||||||| || || || | ||| |||||||
Sbjct 1295954 ATTCAAAAGGAGTCGACCCTCCACTTGGTGTT 1295923
>seq38
Length=1003587
Score = 82.4 bits (90), Expect = 6e-11
Identities = 153/225 (68%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 110275 GCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGACGA 110334
|||||| || ||||| ||| | || ||||| || || ||| |||| ||| | |||
Sbjct 148948 GCAAATCTTCGTCAAGACTCTTACAGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 149007
Query 110335 TACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACA 110394
|| ||| | | || || ||||| ||||| |||||| | ||| || || ||
Sbjct 149008 CACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGCA 149067
Query 110395 AAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACAT 110454
| | || || | ||| || || ||||| ||||||| | | || | || |||||||||||
Sbjct 149068 ACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAACAT 149127
Query 110455 TCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
||||| || || || | ||| |||| | | || ||||| ||
Sbjct 149128 CCAAAAGGAGTCGACCCTCCACTTGGTCCTCCGTCTCCGAGGTGG 149172
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412841388676706
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |