Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015505.1_202016-12- 23] 42 sequences; 25,806,628 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq25 192 9e-43 seq20 145 1e-28 seq39 105 1e-16 >seq25 Length=1823320 Score = 192 bits (212), Expect = 9e-43 Identities = 198/259 (76%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| |||||||| || | ||| |||| ||||||||||| || | |||||| || Sbjct 21310 TGGTCGACGTAGCGCGCGGTATTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAG 21251 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | |||||| ||||| || | ||| | ||| | ||||| | ||||| | || ||| Sbjct 21250 TAGCCGTTCGTGCCGGCGATGTAAGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCG 21191 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || ||||| | ||||||||||||||||||| | || ||||| ||||||||||| ||| Sbjct 21190 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGCCTTCG 21131 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 ||||| || ||||||| | ||| ||||||||||| |||||| | | ||| ||| Sbjct 21130 ATCGAATCATCCTTCATCGTGACCAGGAAGCACGACGAAAGCTGCGGGTGAGGCGTTCCG 21071 Query 2073781 GCATTGAAGAGCGTGGGCG 2073799 || |||||||| || |||| Sbjct 21070 GCGTTGAAGAGTGTCGGCG 21052 Score = 145 bits (160), Expect = 1e-28 Identities = 292/439 (67%), Gaps = 0/439 (0%) Strand=Plus/Minus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGC 2071633 ||| || || |||||||||||||| | |||| | | ||||| ||||||| ||||| Sbjct 21750 ACTCGATGATTTCGGTGCACAGGTTCGACGACTTGATCGTGCCAAGGTTCTTTTGGTTCG 21691 Query 2071634 TGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCG 2071693 || ||| |||||||||||| |||||| | || || || |||| ||| ||| Sbjct 21690 ATTTCTTGTTTGCGGCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTCGACCTGGGCCT 21631 Query 2071694 TGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCCTNNNNNN 2071753 || || || |||||| | ||||||| | || || | |||||||||| Sbjct 21630 CGAGAATCGCGTACCAAAGCTTTTGCGCGGGGATCGTCTTCTTGGCGCGGCCCTCCTTTT 21571 Query 2071754 NNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCT 2071813 | |||||| || | |||| | ||||| |||||||| || | Sbjct 21570 CGTATTTCTCGAACAGGGCGCGGAACTCTTCGCCATAAACTTCGTGGAGGCCGGGGGCTT 21511 Query 2071814 CGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGC 2071873 ||| ||||| || || | |||||||||| | | | | || || ||| || || ||| Sbjct 21510 CGGCGGGGCAGAACAGGGGCCAGTCGCCGGCGGCCTCGACTCGCTCCATGAAGAGATCGG 21451 Query 2071874 ACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTT 2071933 |||| || | | |||||||| || || ||| |||||||||||||||||||| Sbjct 21450 GGATCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGC 21391 Query 2071934 TCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGC 2071993 ||||| || | || | || |||||||||||| ||||| |||||| || ||||| | Sbjct 21390 GAAGGTCCAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATCGCGAAGGCTC 21331 Query 2071994 CCTTGCGCTTGCCGCCGCC 2072012 | |||||| ||| || Sbjct 21330 CGGGACGCTTGTTGCCACC 21312 Score = 116 bits (128), Expect = 6e-20 Identities = 177/245 (72%), Gaps = 14/245 (6%) Strand=Plus/Minus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 ||||||||||| |||| ||| || | |||| | ||| ||||||| ||||||||||| Sbjct 22924 TGGTCGACGGTGAACTTGATCGCCCCGACGGCGGCCCGTGTGCGCAAGTAGTACATGCCC 22865 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCAT--TCG 2069368 || || || || || ||| ||||| |||||||||||||| | || ||| ||| Sbjct 22864 GTTTTCAGTCCTCGCTTCCAGCCGTAGAAGTGCATCGACGTGA--GTTGCGCCATCGTCG 22807 Query 2069369 GG-ACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427 || || || ||| || ||||||||| || |||||||| ||| | |||||||| Sbjct 22806 GGCTCGACA-AGTGGATGTTGAGCGATTGCGACTGGTCGATGAAGGCACCTCGGTCGGCG 22748 Query 2069428 GCCATGTC---GATGGTCACGCGGTTG-GACACCTCCCACACGGTCTTGAACAGGGCCTT 2069483 | || ||| |||||| | ||| || | |||||| ||||||||| | | |||||| Sbjct 22747 GACAAGTCAATGATGGT----CTTTTGCGAGAGCTCCCAAACGGTCTTGTAGATGGCCTT 22692 Query 2069484 GAGAT 2069488 ||||| Sbjct 22691 GAGAT 22687 >seq20 Length=1821730 Score = 145 bits (160), Expect = 1e-28 Identities = 169/227 (74%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 |||| || || || |||| ||||||| ||| ||| || ||| | | ||||| || || | Sbjct 624131 CCTTTGTGCCTTCCGAGATGGCGTGCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCG 624190 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||||||||||||||| | ||| || ||||| |||| || ||| || | Sbjct 624191 AGGTCTGGATCTCGCGCGACGAGATGGTCGACTTGCGGTTGTA---GCCCGCGAGCTTGG 624247 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 ||||||||| ||||||| |||| ||||||||||| |||||||| | |||| |||||| Sbjct 624248 ACGCCTCGGTGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTGAGGATCAACATCG 624307 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| || ||||||||| |||||||| | ||||||| Sbjct 624308 CCTTGTTCGAGATACCGGTGTCGGGGTGGACCTGCTTCAACACCTTG 624354 Score = 145 bits (160), Expect = 1e-28 Identities = 169/227 (74%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 |||| || || || |||| ||||||| ||| ||| || ||| | | ||||| || || | Sbjct 674370 CCTTTGTGCCTTCCGAGATGGCGTGCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCG 674311 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||||||||||||||| | ||| || ||||| |||| || ||| || | Sbjct 674310 AGGTCTGGATCTCGCGCGACGAGATGGTCGACTTGCGGTTGTA---GCCCGCGAGCTTGG 674254 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 ||||||||| ||||||| |||| ||||||||||| |||||||| | |||| |||||| Sbjct 674253 ACGCCTCGGTGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTGAGGATCAACATCG 674194 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| || ||||||||| |||||||| | ||||||| Sbjct 674193 CCTTGTTCGAGATACCGGTGTCGGGGTGGACCTGCTTCAACACCTTG 674147 Score = 127 bits (140), Expect = 3e-23 Identities = 165/227 (73%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 ||||||| || || |||| ||||||| ||| || ||| ||| | | ||||| ||| || | Sbjct 308488 CCTTGGTGCCTTCCGAGATGGCGTGCTTGGACAATTCTCCGGGGAGGATCAAGCGAACCG 308429 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||| |||||||| || | ||| || ||||| |||| || ||| || | Sbjct 308428 AGGTTTGGATCTCTCGCGACGAGATGGTCGACTTGCGGTTGTA---GCCCGCGAGCTTGG 308372 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 ||||||||| |||| || |||| ||||||||||| |||||||| | ||| ||||| Sbjct 308371 ATGCCTCGGTGGCGATACGCTCGAAGATGTCGTTGACGAACGAGTTGAGGATAAGCATCG 308312 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| ||| ||||||||| || ||||| | ||| ||| Sbjct 308311 CCTTGTTCGAGATACCCGTGTCGGGGTGAACTTGCTTCAACACTTTG 308265 >seq39 Length=984724 Score = 105 bits (116), Expect = 1e-16 Identities = 127/172 (74%), Gaps = 3/172 (2%) Strand=Plus/Minus Query 796176 GAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGAC 796235 ||| || || ||| |||||| |||||||||||| ||||||||||||||||||||| Sbjct 93375 GAATCGCTCGACCAAGTTCTCGTTGACGATGCCGTCGGAGGCGGCGAAAAAGGCGAGGAC 93316 Query 796236 GTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGAG---ACCCAGTGGACCGTGTCGGC 796292 |||| ||| |||| || |||||| ||||| | |||||| | |||| Sbjct 93315 GTGCGAGATGAAGTAGCGTTCGTCGGGCTTGAGCTTGTTATCCCAGTCATGCATGTCCTT 93256 Query 796293 GCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTAC 796344 | | ||| | ||| ||||||||||||||||| |||||||| || |||||| Sbjct 93255 GGACAAGTCCATCTCTTCGGCGGTCCAAAAGGATGCCTCGGCTTTCTTGTAC 93204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916241932268438