Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015505.1_202016-12-
23] 42 sequences; 25,806,628 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq25 214 3e-49
seq20 132 7e-25
seq39 107 3e-17
>seq25
Length=1823320
Score = 214 bits (236), Expect = 3e-49
Identities = 220/288 (76%), Gaps = 0/288 (0%)
Strand=Plus/Plus
Query 259894 CATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953
||||||| ||| | || ||| || |||| || ||||| || ||||| ||||| |
Sbjct 21023 CATGTCGGAGCGCTACTTTACCCACGCCTCGCCGACACTCTTCAACGCCGGAACGCCTCA 21082
Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013
||||||| |||||||||||| ||| | ||||||| ||||||||||| ||||||||
Sbjct 21083 CCCGCAGCTTTCGTCGTGCTTCCTGGTCACGATGAAGGATGATTCGATCGAAGGCATCTA 21142
Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073
|||||||||||| ||||||||||||||||||| | ||||| || |||||||| |
Sbjct 21143 CGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACCGCCGGTGGTATCGGTTTGAGCAT 21202
Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133
||||| | ||||| | ||| | ||| | || ||||| |||||| | || |||||| |
Sbjct 21203 CCACAACATCCGCGCGACCGGCTCTTACATCGCCGGCACGAACGGCTACTCGAACGGCAT 21262
Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181
|| |||||||| || || | ||| | || |||||||||||||||||
Sbjct 21263 CGTCCCCATGCTCCGTGTCTACAACAATACCGCGCGCTACGTCGACCA 21310
Score = 114 bits (126), Expect = 2e-19
Identities = 291/446 (65%), Gaps = 8/446 (2%)
Strand=Plus/Plus
Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847
|| ||| |||||| || ||||| || |||||| || || |||||||||||| ||
Sbjct 21312 GGTGGCAACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCTTGGCACGCCGACGTC 21371
Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907
| | | |||||||| |||||||||||||| |||| ||| |||| ||
Sbjct 21372 TTTGAGTTCCTGGACCTTCGCAAGAACCACGGCAA-GGAG-----GAAGTCCGCGCTCGT 21425
Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967
|||||||| | | || |||| ||| || || ||| || | | | ||| | ||
Sbjct 21426 GATCTCTTCTTTGCGCTCTGGATCCCCGATCTCTTCATGGAGCGAGTCGAGGCCGCCGGC 21485
Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027
|||||| | || || ||||| |||| || |||||||| |||||| ||||||| |
Sbjct 21486 GACTGGCCCCTGTTCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTTTATGGCGAAGAG 21545
Query 262028 TTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCG-TGCCCGC 262086
|| |||||| | ||| | || | || | |||||
Sbjct 21546 TTCCGCGCCCTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGA-AGACGATCCCCGC 21604
Query 262087 ACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGT 262146
| | || | |||| || ||| ||| |||||| |||| ||||||| || | |||| |
Sbjct 21605 GCAAAAGCTTTGGTACGCGATTCTCGAGGCCCAGGTCGAAACCGGCAACCCGTTCATGCT 21664
Query 262147 CTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGC 262206
|||||||||||||| ||| || ||||| ||||||| ||||| | | | |
Sbjct 21665 CTACAAGGACGCCGCAAACAAGAAATCGAACCAAAAGAACCTTGGCACGATCAAGTCGTC 21724
Query 262207 CAACCTGTGCACCGAGATCGTCCAGT 262232
|||||||||||||| ||| || |||
Sbjct 21725 GAACCTGTGCACCGAAATCATCGAGT 21750
Score = 98.7 bits (108), Expect = 1e-14
Identities = 168/241 (70%), Gaps = 2/241 (1%)
Strand=Plus/Plus
Query 263172 CGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGATAT 263231
|||||||||||| ||| ||||||||| |||||| | | | | | |||||| |
Sbjct 22685 CGATCTCAAGGCCATCTACAAGACCGTTTGGGAGCTCTCGCAAAAGACCATCATTGACTT 22744
Query 263232 GGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGA 263291
| | |||||||| | ||| |||||||| || ||||||||| | || | | |||
Sbjct 22745 GTCCGCCGACCGAGGTGCCTTCATCGACCAGTCGCAATCGCTCAACATCCACTT-GTCGA 22803
Query 263292 -CCCGACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGA 263350
||||||| | | |||||||||||||| ||| | ||| || || || || |
Sbjct 22804 GCCCGACGATGGCGCAACTCACGTCGATGCACTTCTACGGCTGGAAGCGAGGACTGAAAA 22863
Query 263351 CTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGATC 263410
| ||||||||||| ||||||| ||| |||| | | || || | ||||||||||| |
Sbjct 22864 CGGGCATGTACTACTTGCGCACACGGGCCGCCGTCGGGGCGATCAAGTTCACCGTCGACC 22923
Query 263411 A 263411
|
Sbjct 22924 A 22924
>seq20
Length=1821730
Score = 132 bits (146), Expect = 7e-25
Identities = 170/230 (74%), Gaps = 16/230 (7%)
Strand=Plus/Minus
Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975
||||||| | |||||||| |||||| |||| | ||| || |||||| | ||||
Sbjct 624354 CAAGGTGTTGAAGCAGGTCCACCCCGACACCGGT-----ATC-TCGAACAAGGCGATGTT 624301
Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC--GC 725033
|||| | |||||||| ||||||||||| |||| ||||||| ||||||||| |||
Sbjct 624300 GATCCTCAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCACCGAGGC--GTCCAAG 624243
Query 725034 CTGGCGCGCTCCAACAAGCGCAA---CACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|| ||| ||| |||| ||||| || ||| ||||||||||||||||| | ||
Sbjct 624242 CTCGCGGGCT---ACAACCGCAAGTCGACCATCTCGTCGCGCGAGATCCAGACCTCGGTC 624186
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
|| ||||| | | ||| || ||| ||| ||||||| |||| || |||||
Sbjct 624185 CGATTGATCCTCCCCGGAGAGCTGTCCAAGCACGCCATCTCGGAAGGCAC 624136
Score = 132 bits (146), Expect = 7e-25
Identities = 170/230 (74%), Gaps = 16/230 (7%)
Strand=Plus/Plus
Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975
||||||| | |||||||| |||||| |||| | ||| || |||||| | ||||
Sbjct 674147 CAAGGTGTTGAAGCAGGTCCACCCCGACACCGGT-----ATC-TCGAACAAGGCGATGTT 674200
Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC--GC 725033
|||| | |||||||| ||||||||||| |||| ||||||| ||||||||| |||
Sbjct 674201 GATCCTCAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCACCGAGGC--GTCCAAG 674258
Query 725034 CTGGCGCGCTCCAACAAGCGCAA---CACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|| ||| ||| |||| ||||| || ||| ||||||||||||||||| | ||
Sbjct 674259 CTCGCGGGCT---ACAACCGCAAGTCGACCATCTCGTCGCGCGAGATCCAGACCTCGGTC 674315
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
|| ||||| | | ||| || ||| ||| ||||||| |||| || |||||
Sbjct 674316 CGATTGATCCTCCCCGGAGAGCTGTCCAAGCACGCCATCTCGGAAGGCAC 674365
Score = 102 bits (112), Expect = 1e-15
Identities = 136/188 (72%), Gaps = 6/188 (3%)
Strand=Plus/Plus
Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017
||| |||||| | ||| ||| | |||||||| ||||||||||| |||| || ||||
Sbjct 308301 CTCGAACAAGGCGATGCTTATCCTCAACTCGTTCGTCAACGACATCTTCGAGCGTATCGC 308360
Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAA---CACGATCGGCACGCGCGA 725074
||||||||| || ||| ||| |||| ||||| || ||| |||| ||
Sbjct 308361 CACCGAGGCATCCAAGCTCGCGGGCT---ACAACCGCAAGTCGACCATCTCGTCGCGAGA 308417
Query 725075 GATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGA 725134
|||||| ||| | || ||| ||||| | | ||| ||| || ||| ||||||| |||| ||
Sbjct 308418 GATCCAAACCTCGGTTCGCTTGATCCTCCCCGGAGAATTGTCCAAGCACGCCATCTCGGA 308477
Query 725135 GGGCACCA 725142
|||||||
Sbjct 308478 AGGCACCA 308485
>seq39
Length=984724
Score = 107 bits (118), Expect = 3e-17
Identities = 171/238 (72%), Gaps = 7/238 (3%)
Strand=Plus/Plus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| |||| | |||| | |||| ||||||| ||||||||||||||||| ||| | |||
Sbjct 93192 GATCTGGGCACAGTACAAGAAAG-CCGAGGCATCCTTTTGGACCGCCGAAGAGATGGACT 93250
Query 1455835 TCGGCGCCGACACGGTCCACTGGG-TGTC--GCTGAGCGACGACGAGCGCCATTTCATCA 1455891
| | |||| | |||||| | | ||| | |||||| ||| | ||||||
Sbjct 93251 TGTCCAAGGACATGCATGACTGGGATAACAAGCTCAAGCCCGACGAACGCTACTTCATCT 93310
Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951
||||||||||||||||| |||||||| ||| |||||||| ||||||| ||| ||
Sbjct 93311 CGCACGTCCTCGCCTTTT-TCGCCGCCTCCGACGGCATCGTCAACGAGAACTTGGTCGAG 93369
Query 1455952 CGCTT-TATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008
|| || | || |||||||| | | ||||| || | || ||||| ||||| |||
Sbjct 93370 CGATTCTCTG-GTGAGGTCCAGTCCGCTGAGGCCCGATGCTTCTACGGTTTCCAAATC 93426
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177807149022804
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |