Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015505.1_202016-12- 23] 42 sequences; 25,806,628 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq25 214 3e-49 seq20 132 7e-25 seq39 107 3e-17 >seq25 Length=1823320 Score = 214 bits (236), Expect = 3e-49 Identities = 220/288 (76%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 259894 CATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 ||||||| ||| | || ||| || |||| || ||||| || ||||| ||||| | Sbjct 21023 CATGTCGGAGCGCTACTTTACCCACGCCTCGCCGACACTCTTCAACGCCGGAACGCCTCA 21082 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 ||||||| |||||||||||| ||| | ||||||| ||||||||||| |||||||| Sbjct 21083 CCCGCAGCTTTCGTCGTGCTTCCTGGTCACGATGAAGGATGATTCGATCGAAGGCATCTA 21142 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 |||||||||||| ||||||||||||||||||| | ||||| || |||||||| | Sbjct 21143 CGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACCGCCGGTGGTATCGGTTTGAGCAT 21202 Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 ||||| | ||||| | ||| | ||| | || ||||| |||||| | || |||||| | Sbjct 21203 CCACAACATCCGCGCGACCGGCTCTTACATCGCCGGCACGAACGGCTACTCGAACGGCAT 21262 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 || |||||||| || || | ||| | || ||||||||||||||||| Sbjct 21263 CGTCCCCATGCTCCGTGTCTACAACAATACCGCGCGCTACGTCGACCA 21310 Score = 114 bits (126), Expect = 2e-19 Identities = 291/446 (65%), Gaps = 8/446 (2%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| |||||| || ||||| || |||||| || || |||||||||||| || Sbjct 21312 GGTGGCAACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCTTGGCACGCCGACGTC 21371 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 | | | |||||||| |||||||||||||| |||| ||| |||| || Sbjct 21372 TTTGAGTTCCTGGACCTTCGCAAGAACCACGGCAA-GGAG-----GAAGTCCGCGCTCGT 21425 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 |||||||| | | || |||| ||| || || ||| || | | | ||| | || Sbjct 21426 GATCTCTTCTTTGCGCTCTGGATCCCCGATCTCTTCATGGAGCGAGTCGAGGCCGCCGGC 21485 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027 |||||| | || || ||||| |||| || |||||||| |||||| ||||||| | Sbjct 21486 GACTGGCCCCTGTTCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTTTATGGCGAAGAG 21545 Query 262028 TTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCG-TGCCCGC 262086 || |||||| | ||| | || | || | ||||| Sbjct 21546 TTCCGCGCCCTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGA-AGACGATCCCCGC 21604 Query 262087 ACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGT 262146 | | || | |||| || ||| ||| |||||| |||| ||||||| || | |||| | Sbjct 21605 GCAAAAGCTTTGGTACGCGATTCTCGAGGCCCAGGTCGAAACCGGCAACCCGTTCATGCT 21664 Query 262147 CTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGC 262206 |||||||||||||| ||| || ||||| ||||||| ||||| | | | | Sbjct 21665 CTACAAGGACGCCGCAAACAAGAAATCGAACCAAAAGAACCTTGGCACGATCAAGTCGTC 21724 Query 262207 CAACCTGTGCACCGAGATCGTCCAGT 262232 |||||||||||||| ||| || ||| Sbjct 21725 GAACCTGTGCACCGAAATCATCGAGT 21750 Score = 98.7 bits (108), Expect = 1e-14 Identities = 168/241 (70%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 263172 CGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGATAT 263231 |||||||||||| ||| ||||||||| |||||| | | | | | |||||| | Sbjct 22685 CGATCTCAAGGCCATCTACAAGACCGTTTGGGAGCTCTCGCAAAAGACCATCATTGACTT 22744 Query 263232 GGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGA 263291 | | |||||||| | ||| |||||||| || ||||||||| | || | | ||| Sbjct 22745 GTCCGCCGACCGAGGTGCCTTCATCGACCAGTCGCAATCGCTCAACATCCACTT-GTCGA 22803 Query 263292 -CCCGACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGA 263350 ||||||| | | |||||||||||||| ||| | ||| || || || || | Sbjct 22804 GCCCGACGATGGCGCAACTCACGTCGATGCACTTCTACGGCTGGAAGCGAGGACTGAAAA 22863 Query 263351 CTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGATC 263410 | ||||||||||| ||||||| ||| |||| | | || || | ||||||||||| | Sbjct 22864 CGGGCATGTACTACTTGCGCACACGGGCCGCCGTCGGGGCGATCAAGTTCACCGTCGACC 22923 Query 263411 A 263411 | Sbjct 22924 A 22924 >seq20 Length=1821730 Score = 132 bits (146), Expect = 7e-25 Identities = 170/230 (74%), Gaps = 16/230 (7%) Strand=Plus/Minus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||||||| | |||||||| |||||| |||| | ||| || |||||| | |||| Sbjct 624354 CAAGGTGTTGAAGCAGGTCCACCCCGACACCGGT-----ATC-TCGAACAAGGCGATGTT 624301 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC--GC 725033 |||| | |||||||| ||||||||||| |||| ||||||| ||||||||| ||| Sbjct 624300 GATCCTCAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCACCGAGGC--GTCCAAG 624243 Query 725034 CTGGCGCGCTCCAACAAGCGCAA---CACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||| ||| |||| ||||| || ||| ||||||||||||||||| | || Sbjct 624242 CTCGCGGGCT---ACAACCGCAAGTCGACCATCTCGTCGCGCGAGATCCAGACCTCGGTC 624186 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||||| | | ||| || ||| ||| ||||||| |||| || ||||| Sbjct 624185 CGATTGATCCTCCCCGGAGAGCTGTCCAAGCACGCCATCTCGGAAGGCAC 624136 Score = 132 bits (146), Expect = 7e-25 Identities = 170/230 (74%), Gaps = 16/230 (7%) Strand=Plus/Plus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||||||| | |||||||| |||||| |||| | ||| || |||||| | |||| Sbjct 674147 CAAGGTGTTGAAGCAGGTCCACCCCGACACCGGT-----ATC-TCGAACAAGGCGATGTT 674200 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC--GC 725033 |||| | |||||||| ||||||||||| |||| ||||||| ||||||||| ||| Sbjct 674201 GATCCTCAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCACCGAGGC--GTCCAAG 674258 Query 725034 CTGGCGCGCTCCAACAAGCGCAA---CACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||| ||| |||| ||||| || ||| ||||||||||||||||| | || Sbjct 674259 CTCGCGGGCT---ACAACCGCAAGTCGACCATCTCGTCGCGCGAGATCCAGACCTCGGTC 674315 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||||| | | ||| || ||| ||| ||||||| |||| || ||||| Sbjct 674316 CGATTGATCCTCCCCGGAGAGCTGTCCAAGCACGCCATCTCGGAAGGCAC 674365 Score = 102 bits (112), Expect = 1e-15 Identities = 136/188 (72%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 ||| |||||| | ||| ||| | |||||||| ||||||||||| |||| || |||| Sbjct 308301 CTCGAACAAGGCGATGCTTATCCTCAACTCGTTCGTCAACGACATCTTCGAGCGTATCGC 308360 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAA---CACGATCGGCACGCGCGA 725074 ||||||||| || ||| ||| |||| ||||| || ||| |||| || Sbjct 308361 CACCGAGGCATCCAAGCTCGCGGGCT---ACAACCGCAAGTCGACCATCTCGTCGCGAGA 308417 Query 725075 GATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGA 725134 |||||| ||| | || ||| ||||| | | ||| ||| || ||| ||||||| |||| || Sbjct 308418 GATCCAAACCTCGGTTCGCTTGATCCTCCCCGGAGAATTGTCCAAGCACGCCATCTCGGA 308477 Query 725135 GGGCACCA 725142 ||||||| Sbjct 308478 AGGCACCA 308485 >seq39 Length=984724 Score = 107 bits (118), Expect = 3e-17 Identities = 171/238 (72%), Gaps = 7/238 (3%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| |||| | |||| | |||| ||||||| ||||||||||||||||| ||| | ||| Sbjct 93192 GATCTGGGCACAGTACAAGAAAG-CCGAGGCATCCTTTTGGACCGCCGAAGAGATGGACT 93250 Query 1455835 TCGGCGCCGACACGGTCCACTGGG-TGTC--GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | |||| | |||||| | | ||| | |||||| ||| | |||||| Sbjct 93251 TGTCCAAGGACATGCATGACTGGGATAACAAGCTCAAGCCCGACGAACGCTACTTCATCT 93310 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||||||||||||||| |||||||| ||| |||||||| ||||||| ||| || Sbjct 93311 CGCACGTCCTCGCCTTTT-TCGCCGCCTCCGACGGCATCGTCAACGAGAACTTGGTCGAG 93369 Query 1455952 CGCTT-TATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 || || | || |||||||| | | ||||| || | || ||||| ||||| ||| Sbjct 93370 CGATTCTCTG-GTGAGGTCCAGTCCGCTGAGGCCCGATGCTTCTACGGTTTCCAAATC 93426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177807149022804