Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015505.1_202016-12- 23] 42 sequences; 25,806,628 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq25 156 5e-33 seq17 154 2e-32 seq39 113 6e-20 >seq25 Length=1823320 Score = 156 bits (172), Expect = 5e-33 Identities = 545/848 (64%), Gaps = 11/848 (1%) Strand=Plus/Minus Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 ||||| || ||||| ||||| || || ||| ||| | | |||||| | ||||| Sbjct 21796 GCGATCGAGGCCAAGTTGCAGACGGCGCACTCGTCCGGCGCGGAGTACTCGATGATTTCG 21737 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 || || | ||| || ||| ||||| || | ||||||||||| |||||||| Sbjct 21736 GTGCACAGGTTCGACGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTCTTGTTTGCG 21677 Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415 || ||||||||||||||| | || | || || || ||| | | |||||| || | | Sbjct 21676 GCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTCGACCTGGGCCTCGAGAATCGCGTAC 21617 Query 111416 CAAA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTA 111474 |||| | | || || || | | ||||| || |||||| ||||| || | | Sbjct 21616 CAAAGCTTTTGC-GCGGGGATCGTCTTCTTGGCGCGGCCCTCCTTTTCGTATTTCTCGAA 21558 Query 111475 GAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAA 111534 ||||| ||||| || || | ||| ||| || || || | | | || ||||| Sbjct 21557 CAGGGCGCGGAACTCTTCGCCATAAACTTCGTGGAGGCCGGGGGCTTCGGCGGGGCAGAA 21498 Query 111535 AAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGA 111594 || | ||| | || | |||| || |||| |||||| || || || ||||| || | Sbjct 21497 CAGGGGCCAGTCGCCGGCGGCCTCGACTCGCTCCATGAAGAGATCGGGGATCCAGAGCGC 21438 Query 111595 TGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAA 111654 | |||||||| | | || | || || | || ||||| || | || ||||| Sbjct 21437 AAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAA 21378 Query 111655 CTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC-- 111712 ||| | || || |||||||| ||||| || |||| |||| | ||| ||||| Sbjct 21377 CTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATCGCGAAGGCTCC---GGGACGCTT 21321 Query 111713 ----CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 111768 ||| |||| | || |||||||| || ||| | || || ||||| || | || Sbjct 21320 GTTGCCACCTTGGTCGACGTAGCGCGCGGTATTGTTGTAGACACGGAGCATGGGGACGAT 21261 Query 111769 ACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGAT 111828 || | || | || || || || || ||| | || | | | ||||| Sbjct 21260 GCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTAAGAGCCGGTCGCGCGGATGTTGTGGAT 21201 Query 111829 GTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATA 111888 | || || ||||| || || ||| ||||| |||| ||| | | || || | || Sbjct 21200 GCTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTA 21141 Query 111889 GATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT 111948 ||| || | ||| || || ||||| | | || |||||||| || | |||||| Sbjct 21140 GATGCCTTCGATCGAATCATCCTTCATCGTGACCAGGAAGCACGACGAAAGCTGCGGGTG 21081 Query 111949 TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTT 112008 || || || || |||||||| || || | ||||| | || | | ||||| Sbjct 21080 AGGCGTTCCGGCGTTGAAGAGTGTCGGCGAGGCGTGGGTAAAGTAGCGCTCCGACATGAG 21021 Query 112009 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCAT 112068 || ||| | || |||||| || ||||| | ||||||||||||| ||||| ||||| Sbjct 21020 GTTGTACGACTGCAAGACGCGCTCGATGTCGTGACCGTGGATGCCGACGGCGACGCGCAT 20961 Query 112069 GAACATGT 112076 || ||||| Sbjct 20960 GAGCATGT 20953 >seq17 Length=1685150 Score = 154 bits (170), Expect = 2e-32 Identities = 270/393 (69%), Gaps = 0/393 (0%) Strand=Plus/Plus Query 9155 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 9214 |||| |||| |||||||| |||| ||| ||| ||| ||||| ||| | || ||| Sbjct 61167 CCGCTTCTACCAAGCCTCGACCTCCGAGTTGTATGGCAAGGTCGTCGAGACCCCTCAATC 61226 Query 9215 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 9274 |||| ||| ||||||||||| || || ||||||||| | ||| | || || Sbjct 61227 CGAGACGACGCCCTTCTACCCTCGTTCACCTTACGGAGTCGCCAAGTTGTACGCCTTCTG 61286 Query 9275 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 9334 | ||||||| || ||||||||||| |||| ||| |||||| ||| ||| | ||||| Sbjct 61287 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCTTGTTCAA 61346 Query 9335 CCATGAATCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTACCGAGGGTATCAA 9394 ||| || || ||| | || ||| ||||||||| | ||||||| || | | || Sbjct 61347 CCACGAGTCCCCGCGTCGTGGTCGTACCTTTGTGACGAGGAAGATTTCCCGAGCTGTCGC 61406 Query 9395 ACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGA 9454 | ||| | ||| || |||| | | | | | || ||| | | || || | || Sbjct 61407 CGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAACTTGGAGGCCAAGCGTGA 61466 Query 9455 TTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGC 9514 |||||| |||||| || || || || | ||||||| | ||||| || ||||| | Sbjct 61467 TTGGGGACACGCGCGCGATTACGTCGAGGGTATGTGGATGATGCTGCAGCAAGACACCCC 61526 Query 9515 CGACGAATATGTAGTAGCAACGGGTGAGACCCA 9547 |||||| | ||| | || |||||||||||||| Sbjct 61527 CGACGACTTTGTCCTCGCGACGGGTGAGACCCA 61559 >seq39 Length=984724 Score = 113 bits (124), Expect = 6e-20 Identities = 162/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 9155 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 9214 |||| |||| || ||||| |||| ||| ||| || ||||| ||| | || || Sbjct 270946 CCGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTC 270887 Query 9215 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 9274 |||| ||| ||||||||||| || ||| |||||||||| | ||| | || || Sbjct 270886 CGAGACGACCCCCTTCTACCCTCGTTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTG 270827 Query 9275 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 9334 | ||||||| || ||||||||||| |||| ||| |||||| ||| ||||||||||| Sbjct 270826 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAA 270767 Query 9335 CCATGAATCACCGAGACGAGG-TGCAGACTTTGTGACCATGAAGAT 9379 ||| || || || | || || ||| |||||| |||| ||||| Sbjct 270766 CCACGAGTCCCCCCGTCGTGGCCGCA-CCTTTGTCACCAGAAAGAT 270722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031670283200