Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015505.1_202016-12- 23] 42 sequences; 25,806,628 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq25 127 6e-24 seq24 98.7 3e-15 seq38 96.9 1e-14 >seq25 Length=1823320 Score = 127 bits (140), Expect = 6e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | || || || ||||| || || || || | Sbjct 1054765 TTTGCATACCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGT 1054824 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| | | || || ||||| || ||||| || || |||||||| |||||||| || | Sbjct 1054825 AATCTGCGAGCGTACGGCCATCCTCGAGTTGCTTGCCCGCAAAGATGAGACGTTGTTGGT 1054884 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || || ||||| || | || || || ||||||| || || | Sbjct 1054885 CTGGGGGAATGCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCAATCGTGTCCGAAG 1054944 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || ||||| | ||||| || || || || || ||||| |||||||| Sbjct 1054945 ACTCGACCTCGAGTGTGATGGTCTTGCCAGTCAGGGTCTTAACAAAGATCTGCAT 1054999 Score = 118 bits (130), Expect = 3e-21 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | || || || ||||| || || || || | Sbjct 1053625 TTTGCATACCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGT 1053684 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| | | || || ||||| || ||||| || || |||||||| |||||||| || | Sbjct 1053685 AATCTGCGAGCGTACGGCCATCCTCGAGTTGCTTGCCCGCAAAGATGAGACGTTGTTGGT 1053744 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || || ||||| || | || || || ||||||| || || | Sbjct 1053745 CTGGGGGAATGCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCAATCGTGTCTGAAG 1053804 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||| ||||| | || || ||||| || ||||| Sbjct 1053805 ACTCGACCTCGAGCGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATTTGCAT 1053859 Score = 113 bits (124), Expect = 1e-19 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | || || || ||||| || || || || | Sbjct 1053853 TTTGCATACCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGT 1053912 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| | | || || ||||| || ||||| || || |||||||| |||||||| || | Sbjct 1053913 AATCTGCGAGCGTACGGCCATCCTCGAGTTGCTTGCCCGCAAAGATGAGACGTTGTTGGT 1053972 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || || ||||| || | || || || ||||||| || || | Sbjct 1053973 CTGGGGGAATGCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCAATCGTGTCCGACG 1054032 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||| ||||| | || || || || || ||||| Sbjct 1054033 ACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 1054087 Score = 113 bits (124), Expect = 1e-19 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | || || || ||||| || || || || | Sbjct 1054081 TTTGCATACCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGT 1054140 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| | | || || ||||| || ||||| || || |||||||| |||||||| || | Sbjct 1054141 AATCTGCGAGCGTACGGCCATCCTCGAGTTGCTTGCCCGCAAAGATGAGACGTTGTTGGT 1054200 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || || ||||| || | || || || ||||||| || || | Sbjct 1054201 CTGGGGGAATGCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCAATCGTGTCCGACG 1054260 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||| ||||| | || || || || || ||||| Sbjct 1054261 ACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 1054315 Score = 95.1 bits (104), Expect = 4e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | || || || ||||| || || || || | Sbjct 1054537 TTTGCATACCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGT 1054596 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || ||||| || || || || || |||||||| | || ||||| | Sbjct 1054597 AGTCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCAAAGATCAATCGCTGCTGGT 1054656 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || || || || || | || || || || |||| || || | Sbjct 1054657 CTGGGGGAATACCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAAG 1054716 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | |||||| || || || || || ||||| || ||||| Sbjct 1054717 ACTCGACCTCGAGGGTGATTGTCTTGCCCGTCAGCGTCTTGACAAAGATTTGCAT 1054771 Score = 86.0 bits (94), Expect = 2e-11 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | || || || ||||| || || || || | Sbjct 1054309 TTTGCATACCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGT 1054368 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || ||||| || || || || || |||||||| | || ||||| | Sbjct 1054369 AGTCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCAAAGATCAATCGCTGCTGGT 1054428 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || || || || || | || || || || |||| || || | Sbjct 1054429 CTGGGGGAATACCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGACG 1054488 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||| ||||| | || || || || || ||||| Sbjct 1054489 ACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 1054543 >seq24 Length=1584903 Score = 98.7 bits (108), Expect = 3e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || | || || || ||||| ||||| || || ||||| | Sbjct 1347352 ACCACCACGCAGGCGGAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTGTAATCGGC 1347411 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| || || || || || |||||||| ||||||||||| || || || Sbjct 1347412 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGGGG 1347471 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || ||||| || || || || || | || || || || |||| || || | || || Sbjct 1347472 GATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGAC 1347531 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCA 140736 || || || | ||||| || || || || || || || || |||| Sbjct 1347532 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCA 1347578 >seq38 Length=1003587 Score = 96.9 bits (106), Expect = 1e-14 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 |||||||| || | | || || | || || || ||||| ||||| || || ||||| Sbjct 149175 ATACCACCTCGGAGACGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCG 149116 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 | | || || ||||| || || || || || |||||||| ||||||||||| || || Sbjct 149115 GCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGG 149056 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 || || ||||| || || || || || | || || || || |||| || || | || Sbjct 149055 GGGATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCG 148996 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGC 140735 || || || || | ||||| || || || || || || || || ||| Sbjct 148995 ACCTCGAGGGTGATCGTCTTGCCTGTAAGAGTCTTGACGAAGATTTGC 148948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253584603726