Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015505.1_202016-12- 23] 42 sequences; 25,806,628 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq25 336 2e-87 seq24 129 6e-25 seq17 98.7 1e-15 >seq25 Length=1823320 Score = 336 bits (372), Expect = 2e-87 Identities = 535/765 (70%), Gaps = 2/765 (0%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 |||||||||||||| | || ||||||||| ||||| | ||| ||| || ||||| Sbjct 20959 TCATGCGCGTCGCCGTCGGCATCCACGGTCACGACATCGAGCGCGTCTTGCAGTCGTACA 21018 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | |||||||| |||||| |||| || || |||||||| || ||| Sbjct 21019 ACCTCATGTCGGAGCGCTACTTTACCCACGCCTCGCCGACACTCTTCAACGCCGGAACGC 21078 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 |||||| ||| | ||| ||||||||||| ||||||||||||| |||||||| |||| Sbjct 21079 CTCACCCGCAGCTTTCGTCGTGCTTCCTGGTCACGATGAAGGATGATTCGATCGAAGGCA 21138 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| ||||||||| ||| || | |||||||||| | |||||||||||| | Sbjct 21139 TCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACCGCCGGTGGTATCGGTTTGA 21198 Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 | | ||| |||| |||| |||| | ||| || ||||||||| | | | | Sbjct 21199 GCATCCACAACATCCGCGCGACCGGCTCTTACATCGCCGGCACGAACGGCTACTCGAACG 21258 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | ||||| || |||||||| |||| |||||| || || || |||||| |||| ||||| Sbjct 21259 GCATCGTCCCCATGCTCCGTGTCTACAACAATACCGCGCGCTACGTCGACCAAGGTGGCA 21318 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | ||||| |||||||||||||| |||||||||||| | | |||| Sbjct 21319 ACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCTTGGCACGCCGACGTCTTTGAGT 21378 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672 | || || || || ||| || || | || || | ||| ||||| || || | Sbjct 21379 TCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAAGTCCGCGCTCGTGATCTCTTCTTTG 21438 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 | || ||||| || || ||||||||| | || ||| | || || ||| |||| Sbjct 21439 CGCTCTGGATCCCCGATCTCTTCATGGAGCGAGTCGAGGCCGCCGGCGACTGGCCCCTGT 21498 Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGT 53792 | ||||| ||| |||||||||||| | || || || || ||||| || ||| Sbjct 21499 TCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTTTATGGCGAAGAGTTCCGCGCCCTGT 21558 Query 53793 ATCG-GACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGG 53851 ||| || |||| | |||||||| |||||||| | || |||| || | ||| Sbjct 21559 -TCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAGACGATCCCCGCGCAAAAGCTTTGG 21617 Query 53852 GATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCG 53911 | || || ||| || |||||| || || || | |||| |||| ||||||||| | Sbjct 21618 TACGCGATTCTCGAGGCCCAGGTCGAAACCGGCAACCCGTTCATGCTCTACAAGGACGCC 21677 Query 53912 GTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCG 53956 | ||| |||| ||||| |||||| | ||| ||||| ||| Sbjct 21678 GCAAACAAGAAATCGAACCAAAAGAACCTTGGCACGATCAAGTCG 21722 Score = 100 bits (110), Expect = 3e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 55726 TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAG 55785 |||||||| || ||| ||| || |||||| | | || |||| | |||||| || Sbjct 22688 TCTCAAGGCCATCTACAAGACCGTTTGGGAGCTCTCGCAAAAGACCATCATTGACTTGTC 22747 Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 || || || ||||| | |||||||||||| || || || |||||| | || || || Sbjct 22748 CGCCGACCGAGGTGCCTTCATCGACCAGTCGCAATCGCTCAACATCCACTTGTCGAGCCC 22807 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | |||| | | | ||||||||||| ||||| |||||| ||||| || ||||| Sbjct 22808 GACGATGGCGCAACTCACGTCGATGCACTTCTACGGCTGGAAGCGAGGACTGAAAACGGG 22867 Query 55906 TATGTACTATCTGCGGACCCGCGCC 55930 |||||||| |||| || || ||| Sbjct 22868 CATGTACTACTTGCGCACACGGGCC 22892 >seq24 Length=1584903 Score = 129 bits (142), Expect = 6e-25 Identities = 276/407 (68%), Gaps = 8/407 (2%) Strand=Plus/Minus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| || || || ||||| | || ||||||||| ||| || | || ||| ||| Sbjct 561960 ATCCCGTTCCAATACCCTCCGAGCCATTGACCAGAGCCATGGGGATGATGGGGATGTACC 561901 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 | |||||| | |||||| ||||| | | ||||| | ||| | ||||| | Sbjct 561900 AAGACGGCTCGATGCTTTGACCATCATCGTTGAGGTATTCGAGCACGCTGTCATCAGCGG 561841 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACG--CGTGAAGATGTATCGGGAGCTG-- 152049 ||| ||| | | || || || ||| | | ||| ||| |||||||| || ||| | Sbjct 561840 GATGGAAAACGCTACGCGTGAT-GGA-TGACACGTTCGTAAAGATGTAACG--AGCCGAA 561785 Query 152050 GCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTG 152109 ||||| || || |||||| || ||||| ||||| || || || ||||| | |||| Sbjct 561784 GCCGCGTCTTTACCACCTTGCAAACGCGTACCAAATTGACCGTTCGGGTCGAGAATGTTG 561725 Query 152110 AGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCT 152169 |||||||||| || || || | || |||| | | || ||||| |||| |||| | Sbjct 561724 AGGTTGTTGGACCCTACAAACTGTTGCGCCAGACCGATGATGGTGCCTTGCAAACTCATT 561665 Query 152170 TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATG 152229 |||||||| || ||||||| ||||| |||| ||| || |||| || | ||||| || Sbjct 561664 TCACCGTGATGGTACGCCGAGTGCTCGGCGACGTAACCGCCCAATTGTCCGACCTTGATC 561605 Query 152230 TCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTG 152276 || ||||| || ||||| || || | | |||||||| || Sbjct 561604 TCTTGCGTCAATTTGCGCTTGAAGCAACCGAACAAGACCTTGCGTTG 561558 Score = 86.0 bits (94), Expect = 7e-12 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGTT 119142 |||||| | |||||| ||||| ||||||| ||||||||| || || ||||||||||| Sbjct 559787 GTTGGCCAACTTGGCTCCGTAACCGTTCCTACCACCGGTGACCTTCTCCTCCTCGTCGTC 559728 Query 119143 GTAGTTGGAGCTGGTCAAAAG-GTGCCCAAAGATGAGCTCGGGGATCCAAA 119192 |||||||| ||| | || ||| |||||||| | || |||||||||| Sbjct 559727 ATAGTTGGAAGAGGTGAGCAGAGTG-CCAAAGATCATTTCCGGGATCCAAA 559678 >seq17 Length=1685150 Score = 98.7 bits (108), Expect = 1e-15 Identities = 221/329 (67%), Gaps = 5/329 (2%) Strand=Plus/Minus Query 158958 GTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCA 159017 ||| ||||| || ||||| | |||||||| || || | || || ||||| | ||| Sbjct 61560 GTGGGTCTCACCCGTCGCGAGGACAAAGTCGTCGGGGGTGTCTTGCTGCAGCATCATCCA 61501 Query 159018 CATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAG 159077 ||| ||||||||||||| ||||||| ||||| || |||||||| |||| ||| ||||| Sbjct 61500 CATACCCTCGACGTAATCGCGCGCGTGTCCCCAATCACGCTTGGCCTCCAAGTTGCCGAG 61441 Query 159078 CTCGATG-ACTTTTCCAGACTTTTTCCA---CTCAGCCAGACCGAGCGTGATCTTGCGCG 159133 | || | | | | ||| | | ||| || | | | | | ||||| | || Sbjct 61440 GTAGAGGCAGTCCTGTTGAC-CGAGCGAGATCTCGGCGACAGCTCGGGAAATCTTCCTCG 61382 Query 159134 TCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTACAAGCGA 159193 ||||||| || || || ||||| ||||| |||| || ||| | || ||| Sbjct 61381 TCACAAAGGTACGACCACGACGCGGGGACTCGTGGTTGAACAAGATACCGTTGCACGCGT 61322 Query 159194 ACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAGCTTGGAGACGC 159253 ||| || || ||||||||||| || || |||||| | | | | ||||| ||| | Sbjct 61321 ACATGTCGTACGACTCGCGGTAGTTCTTGACGATCCAGAAGGCGTACAACTTGGCGACTC 61262 Query 159254 CGTATGGACTCCGAGGATAAAATGGTGTC 159282 |||| || ||||| || || || ||| Sbjct 61261 CGTAAGGTGAACGAGGGTAGAAGGGCGTC 61233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215712711600