Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015505.1_202016-12- 23] 42 sequences; 25,806,628 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq25 111 1e-19 seq24 105 5e-18 seq38 95.1 8e-15 >seq25 Length=1823320 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 23602 TTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTT 23661 |||||| | ||||| || || || || ||||| || || || |||||||| ||||| || Sbjct 1296371 TTACTTCAGATGCAAATCTTTGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTC 1296312 Query 23662 GACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCG 23721 || ||| ||||||| |||| | | || ||||| ||||| || || | || Sbjct 1296311 GAGTCCTCGGACACGATTGACAACGTCAAGGCCAAAATCCAGGACAAGGAGGGCATTCCC 1296252 Query 23722 CCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGC 23781 ||||| ||||| ||| | || ||||| ||||| ||||| || || | || || | | Sbjct 1296251 CCAGACCAACAACGTCTTATCTTTGCGGGCAAGCAACTCGAGGATGGCCGTACGCTCGCG 1296192 Query 23782 GATTACAACATACAAAAAGAGTCCAC 23807 ||||||||||| ||||| ||||| || Sbjct 1296191 GATTACAACATTCAAAAGGAGTCGAC 1296166 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| ||||| || || || || ||||| ||||| || || || || Sbjct 1054999 ATGCAGATCTTTGTTAAGACCCTGACTGGCAAGACCATCACACTCGAGGTCGAGTCTTCG 1054940 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || | || || || | || ||||| || || | || ||||| || Sbjct 1054939 GACACGATTGACAACGTCAAGACCAAGA-TTCAAGACAAGGAGGGCATTCCCCCAGACCA 1054881 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || ||||| ||||| ||||| || || | || || | | |||||||| Sbjct 1054880 ACAACGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGTACGCTCGCAGATTACAA 1054821 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 1054820 CATCCAGAAGGAGTCGAC 1054803 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||| | || || || |||||||| ||||| || || || || Sbjct 1054087 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 1054028 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || | || || || | || ||||| || || | || ||||| || Sbjct 1054027 GACACGATTGACAACGTCAAGACCAAGA-TTCAAGACAAGGAGGGCATTCCCCCAGACCA 1053969 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || ||||| ||||| ||||| || || | || || | | |||||||| Sbjct 1053968 ACAACGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGTACGCTCGCAGATTACAA 1053909 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 1053908 CATCCAGAAGGAGTCGAC 1053891 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||| | || || || |||||||| ||||| || || || || Sbjct 1054315 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 1054256 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || | || || || | || ||||| || || | || ||||| || Sbjct 1054255 GACACGATTGACAACGTCAAGACCAAGA-TTCAAGACAAGGAGGGCATTCCCCCAGACCA 1054197 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || ||||| ||||| ||||| || || | || || | | |||||||| Sbjct 1054196 ACAACGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGTACGCTCGCAGATTACAA 1054137 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 1054136 CATCCAGAAGGAGTCGAC 1054119 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||| | || || || || ||||| ||||| || || || | Sbjct 1053859 ATGCAAATCTTTGTCAAGACCTTGACCGGCAAGACCATCACGCTCGAGGTCGAGTCTTCA 1053800 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || | || || || | || ||||| || || | || ||||| || Sbjct 1053799 GACACGATTGACAACGTCAAGACCAAGA-TTCAAGACAAGGAGGGCATTCCCCCAGACCA 1053741 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || ||||| ||||| ||||| || || | || || | | |||||||| Sbjct 1053740 ACAACGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGTACGCTCGCAGATTACAA 1053681 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 1053680 CATCCAGAAGGAGTCGAC 1053663 >seq24 Length=1584903 Score = 105 bits (116), Expect = 5e-18 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 23612 TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGG 23671 |||| || ||||| || ||||||||||| || || ||||| ||||| || || || | | Sbjct 1347578 TGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 1347519 Query 23672 ACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||| | || || | || || || | | ||||| ||||| | || ||||| || Sbjct 1347518 ACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCCCCAGACCAG 1347460 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||||||||| || || || || | ||||| | | |||||||||| Sbjct 1347459 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAC 1347400 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 1347399 ATCCAAAAGGAGTCGAC 1347383 >seq38 Length=1003587 Score = 95.1 bits (104), Expect = 8e-15 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 23613 GCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGA 23672 ||| || ||||| || || || || || || |||||||| ||||| || || || | || Sbjct 148948 GCAAATCTTCGTCAAGACTCTTACAGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 149007 Query 23673 CACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731 ||| | || || | || || || | | ||||| ||||| | || ||||| || | Sbjct 149008 CACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCCCCAGACCAGC 149066 Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACA 23791 | ||| | || ||||||||||| || || || || | ||||| | | ||||||||||| Sbjct 149067 AACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAACA 149126 Query 23792 TACAAAAAGAGTCCAC 23807 | ||||| ||||| || Sbjct 149127 TCCAAAAGGAGTCGAC 149142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009426981336