Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015505.1_202016-12-
23] 42 sequences; 25,806,628 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq25 111 1e-19
seq24 105 5e-18
seq38 95.1 8e-15
>seq25
Length=1823320
Score = 111 bits (122), Expect = 1e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 23602 TTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTT 23661
|||||| | ||||| || || || || ||||| || || || |||||||| ||||| ||
Sbjct 1296371 TTACTTCAGATGCAAATCTTTGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTC 1296312
Query 23662 GACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCG 23721
|| ||| ||||||| |||| | | || ||||| ||||| || || | ||
Sbjct 1296311 GAGTCCTCGGACACGATTGACAACGTCAAGGCCAAAATCCAGGACAAGGAGGGCATTCCC 1296252
Query 23722 CCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGC 23781
||||| ||||| ||| | || ||||| ||||| ||||| || || | || || | |
Sbjct 1296251 CCAGACCAACAACGTCTTATCTTTGCGGGCAAGCAACTCGAGGATGGCCGTACGCTCGCG 1296192
Query 23782 GATTACAACATACAAAAAGAGTCCAC 23807
||||||||||| ||||| ||||| ||
Sbjct 1296191 GATTACAACATTCAAAAGGAGTCGAC 1296166
Score = 102 bits (112), Expect = 6e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || ||||| ||||| || || || || ||||| ||||| || || || ||
Sbjct 1054999 ATGCAGATCTTTGTTAAGACCCTGACTGGCAAGACCATCACACTCGAGGTCGAGTCTTCG 1054940
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| || | || || || | || ||||| || || | || ||||| ||
Sbjct 1054939 GACACGATTGACAACGTCAAGACCAAGA-TTCAAGACAAGGAGGGCATTCCCCCAGACCA 1054881
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| ||| | || ||||| ||||| ||||| || || | || || | | ||||||||
Sbjct 1054880 ACAACGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGTACGCTCGCAGATTACAA 1054821
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 1054820 CATCCAGAAGGAGTCGAC 1054803
Score = 98.7 bits (108), Expect = 7e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || ||| | || || || |||||||| ||||| || || || ||
Sbjct 1054087 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 1054028
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| || | || || || | || ||||| || || | || ||||| ||
Sbjct 1054027 GACACGATTGACAACGTCAAGACCAAGA-TTCAAGACAAGGAGGGCATTCCCCCAGACCA 1053969
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| ||| | || ||||| ||||| ||||| || || | || || | | ||||||||
Sbjct 1053968 ACAACGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGTACGCTCGCAGATTACAA 1053909
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 1053908 CATCCAGAAGGAGTCGAC 1053891
Score = 98.7 bits (108), Expect = 7e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || ||| | || || || |||||||| ||||| || || || ||
Sbjct 1054315 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 1054256
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| || | || || || | || ||||| || || | || ||||| ||
Sbjct 1054255 GACACGATTGACAACGTCAAGACCAAGA-TTCAAGACAAGGAGGGCATTCCCCCAGACCA 1054197
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| ||| | || ||||| ||||| ||||| || || | || || | | ||||||||
Sbjct 1054196 ACAACGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGTACGCTCGCAGATTACAA 1054137
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 1054136 CATCCAGAAGGAGTCGAC 1054119
Score = 84.2 bits (92), Expect = 1e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || || || || ||| | || || || || ||||| ||||| || || || |
Sbjct 1053859 ATGCAAATCTTTGTCAAGACCTTGACCGGCAAGACCATCACGCTCGAGGTCGAGTCTTCA 1053800
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| || | || || || | || ||||| || || | || ||||| ||
Sbjct 1053799 GACACGATTGACAACGTCAAGACCAAGA-TTCAAGACAAGGAGGGCATTCCCCCAGACCA 1053741
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| ||| | || ||||| ||||| ||||| || || | || || | | ||||||||
Sbjct 1053740 ACAACGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGTACGCTCGCAGATTACAA 1053681
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 1053680 CATCCAGAAGGAGTCGAC 1053663
>seq24
Length=1584903
Score = 105 bits (116), Expect = 5e-18
Identities = 143/197 (73%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 23612 TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGG 23671
|||| || ||||| || ||||||||||| || || ||||| ||||| || || || | |
Sbjct 1347578 TGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 1347519
Query 23672 ACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|||| | || || | || || || | | ||||| ||||| | || ||||| ||
Sbjct 1347518 ACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCCCCAGACCAG 1347460
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| ||| | || ||||||||||| || || || || | ||||| | | ||||||||||
Sbjct 1347459 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAC 1347400
Query 23791 ATACAAAAAGAGTCCAC 23807
|| ||||| ||||| ||
Sbjct 1347399 ATCCAAAAGGAGTCGAC 1347383
>seq38
Length=1003587
Score = 95.1 bits (104), Expect = 8e-15
Identities = 140/196 (71%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 23613 GCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGA 23672
||| || ||||| || || || || || || |||||||| ||||| || || || | ||
Sbjct 148948 GCAAATCTTCGTCAAGACTCTTACAGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 149007
Query 23673 CACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731
||| | || || | || || || | | ||||| ||||| | || ||||| || |
Sbjct 149008 CACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCCCCAGACCAGC 149066
Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACA 23791
| ||| | || ||||||||||| || || || || | ||||| | | |||||||||||
Sbjct 149067 AACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAACA 149126
Query 23792 TACAAAAAGAGTCCAC 23807
| ||||| ||||| ||
Sbjct 149127 TCCAAAAGGAGTCGAC 149142
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338009426981336
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |