Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015505.1_202016-12- 23] 42 sequences; 25,806,628 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq38 172 1e-37 seq24 163 7e-35 seq25 141 2e-28 >seq38 Length=1003587 Score = 172 bits (190), Expect = 1e-37 Identities = 162/205 (79%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| ||||| || ||||||||||||||||| || || ||| Sbjct 148949 CAAATCTTCGTCAAGACTCTTACAGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGAC 149008 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| || ||||| ||||| ||||| || ||||||||| Sbjct 149009 ACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGCAA 149068 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || |||||||| ||||| | || || |||||||| ||| || Sbjct 149069 CGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAACATC 149128 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || || || |||| Sbjct 149129 CAAAAGGAGTCGACCCTCCA-CTTG 149152 >seq24 Length=1584903 Score = 163 bits (180), Expect = 7e-35 Identities = 160/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || |||||||||||||| || || ||| Sbjct 1347576 CAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGAC 1347517 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| || ||||| ||||| ||||| || ||||||||| Sbjct 1347516 ACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGCAA 1347457 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || |||||||| ||||| | || || |||||||| ||| || Sbjct 1347456 CGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAACATC 1347397 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || || || |||| Sbjct 1347396 CAAAAGGAGTCGACGCTCCA-CTTG 1347373 >seq25 Length=1823320 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || |||||||| |||||||| || ||| ||| Sbjct 1293623 CAAATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCGGAC 1293564 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||||||||| || || || || || ||||| ||| Sbjct 1293563 ACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAACAA 1293504 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| |||||||| ||||| | || || ||||| || ||| || Sbjct 1293503 CGTCTCATCTTTGCGGGAAAGCAGCTCGAGGATGGCCGCACGCTCGCCGACTACAACATC 1293444 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 1293443 CAGAAGGAGTCGACGCTGCA-CTTG 1293420 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || |||||||| |||||||| || ||| ||| Sbjct 1293851 CAAATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCGGAC 1293792 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||||||||| || || || || || ||||| ||| Sbjct 1293791 ACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAACAA 1293732 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| |||||||| ||||| | || || ||||| || ||| || Sbjct 1293731 CGTCTCATCTTTGCGGGAAAGCAGCTCGAGGATGGCCGCACGCTCGCCGACTACAACATC 1293672 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || || || || | || ||| | ||| Sbjct 1293671 CAGAAGGAGTCGACCCTCCACTTGGTGTTGCGTCTC 1293636 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || |||||||| |||||||| || ||| ||| Sbjct 1294535 CAAATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCGGAC 1294476 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||||||||| || || || || || ||||| ||| Sbjct 1294475 ACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAACAA 1294416 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| |||||||| ||||| | || || ||||| || ||| || Sbjct 1294415 CGTCTCATCTTTGCGGGAAAGCAGCTCGAGGATGGCCGCACGCTCGCCGACTACAACATC 1294356 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || || || || | || ||| | ||| Sbjct 1294355 CAGAAGGAGTCGACCCTCCACTTGGTGTTGCGTCTC 1294320 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || |||||||| |||||||| || ||| ||| Sbjct 1294991 CAAATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCGGAC 1294932 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||||||||| || || || || || ||||| ||| Sbjct 1294931 ACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAACAA 1294872 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| |||||||| ||||| | || || ||||| || ||| || Sbjct 1294871 CGTCTCATCTTTGCGGGAAAGCAGCTCGAGGATGGCCGCACGCTCGCCGACTACAACATC 1294812 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || || || || | || ||| | ||| Sbjct 1294811 CAGAAGGAGTCGACCCTCCACTTGGTGTTGCGTCTC 1294776 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || |||||||| |||||||| || ||| ||| Sbjct 1295219 CAAATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCGGAC 1295160 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||||||||| || || || || || ||||| ||| Sbjct 1295159 ACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAACAA 1295100 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| |||||||| ||||| | || || ||||| || ||| || Sbjct 1295099 CGTCTCATCTTTGCGGGAAAGCAGCTCGAGGATGGCCGCACGCTCGCCGACTACAACATC 1295040 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || || || || | || ||| | ||| Sbjct 1295039 CAGAAGGAGTCGACCCTCCACTTGGTGTTGCGTCTC 1295004 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || |||||||| |||||||| || ||| ||| Sbjct 1295447 CAAATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCGGAC 1295388 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||||||||| || || || || || ||||| ||| Sbjct 1295387 ACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAACAA 1295328 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| |||||||| ||||| | || || ||||| || ||| || Sbjct 1295327 CGTCTCATCTTTGCGGGAAAGCAGCTCGAGGATGGCCGCACGCTCGCCGACTACAACATC 1295268 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || || || || | || ||| | ||| Sbjct 1295267 CAGAAGGAGTCGACCCTCCACTTGGTGTTGCGTCTC 1295232 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || |||||||| |||||||| || ||| ||| Sbjct 1295675 CAAATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCGGAC 1295616 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||||||||| || || || || || ||||| ||| Sbjct 1295615 ACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAACAA 1295556 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| |||||||| ||||| | || || ||||| || ||| || Sbjct 1295555 CGTCTCATCTTTGCGGGAAAGCAGCTCGAGGATGGCCGCACGCTCGCCGACTACAACATC 1295496 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || || || || | || ||| | ||| Sbjct 1295495 CAGAAGGAGTCGACCCTCCACTTGGTGTTGCGTCTC 1295460 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || |||||||| |||||||| || ||| ||| Sbjct 1295903 CAAATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCGGAC 1295844 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||||||||| || || || || || ||||| ||| Sbjct 1295843 ACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAACAA 1295784 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| |||||||| ||||| | || || ||||| || ||| || Sbjct 1295783 CGTCTCATCTTTGCGGGAAAGCAGCTCGAGGATGGCCGCACGCTCGCCGACTACAACATC 1295724 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || || || || | || ||| | ||| Sbjct 1295723 CAGAAGGAGTCGACCCTCCACTTGGTGTTGCGTCTC 1295688 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || || || || |||||||||||||| || || ||| Sbjct 1053628 CAAATCTTTGTCAAGACGCTGACGGGCAAGACAATCACCCTCGAGGTCGAGTCTTCGGAC 1053569 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| || ||||| || || || || || |||||||| Sbjct 1053568 ACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAGCAG 1053509 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| || || |||||||| ||||| | || || ||||| || ||| || Sbjct 1053508 CGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGACTACAACATC 1053449 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 1053448 CAGAAAGAGTCGACCCTTCA-CTTG 1053425 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || |||||||| |||||||| || ||| ||| Sbjct 1294079 CAAATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCGGAC 1294020 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||||||||| || || || || || ||||| ||| Sbjct 1294019 ACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAACAA 1293960 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || || ||||| ||||| | || || ||||| || ||| | Sbjct 1293959 CGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGCACGCTCGCCGACTACAACATT 1293900 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||| || || || || || | || ||| | ||| Sbjct 1293899 CAAAAGGAGTCGACCCTCCACTTGGTGTTGCGTCTC 1293864 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || |||||||| |||||||| || ||| ||| Sbjct 1294307 CAAATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCGGAC 1294248 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||||||||| || || || || || ||||| ||| Sbjct 1294247 ACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAACAA 1294188 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || || ||||| ||||| | || || ||||| || ||| | Sbjct 1294187 CGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGCACGCTCGCCGACTACAACATT 1294128 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||| || || || || || | || ||| | ||| Sbjct 1294127 CAAAAGGAGTCGACCCTCCACTTGGTGTTGCGTCTC 1294092 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || |||||||| |||||||| || ||| ||| Sbjct 1294763 CAAATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCGGAC 1294704 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||||||||| || || || || || ||||| ||| Sbjct 1294703 ACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAACAA 1294644 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || || ||||| ||||| | || || ||||| || ||| | Sbjct 1294643 CGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGCACGCTCGCCGACTACAACATT 1294584 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||| || || || || || | || ||| | ||| Sbjct 1294583 CAAAAGGAGTCGACCCTCCACTTGGTGTTGCGTCTC 1294548 Score = 127 bits (140), Expect = 5e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || || || || |||||||||||||| || || ||| Sbjct 1054768 CAAATCTTTGTCAAGACGCTGACGGGCAAGACAATCACCCTCGAGGTCGAGTCTTCGGAC 1054709 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| || ||||| || || || || || |||||||| Sbjct 1054708 ACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAGCAG 1054649 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| || || || |||||||| ||||| | || || ||||| || ||| || Sbjct 1054648 CGATTGATCTTTGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGACTACAACATC 1054589 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 1054588 CAGAAGGAGTCGACCCTCCA-CTTG 1054565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730552242148