Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015965.1_202016-12- 23] 147 sequences; 31,827,297 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq62 288 9e-73 seq65 118 9e-22 seq73 113 4e-20 seq109 93.3 4e-14 >seq62 Length=232403 Score = 288 bits (318), Expect = 9e-73 Identities = 907/1395 (65%), Gaps = 46/1395 (3%) Strand=Plus/Plus Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| |||| ||||| | || ||| || || |||||| ||||| ||||||||| Sbjct 195411 GAAGTGTACGGCTCGAAGCACTCGTTGAAGCCGAGGATCTGACTCGTCGATGCGGTCGGC 195470 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATC 22621 || ||||| ||| |||||||| | || |||||||||| ||| || ||||||| Sbjct 195471 ATTGGCGCGCACACAAGCGAGTTGCGCAGACCGTGCTTTGCAATCTTCTCCTTGAGCTCG 195530 Query 22622 GACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCG 22681 |||||||||||||||||| ||| |||||| |||||| ||||| |||||| |||| Sbjct 195531 GACCAGTCCCACAGATCGCTCGGGGTCACAC---CCCACAAGTCGTACTGCAACTCGCCC 195587 Query 22682 CGACTCGCCGGGCTGCCTTCGTACGTTTCGTA---------------CGGA----CCAT- 22721 || ||||| || ||| || ||| |||| | || Sbjct 195588 TGAGAAGCCGGAGATCCGGGGTAAGTCGAGTAGTAGCCGGGGTCGGGCGGATTAGCGATG 195647 Query 22722 ---ATATCGCG-GCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAG 22777 | ||||| || | ||||| || ||| | |||| ||| || || ||||||||| Sbjct 195648 GCAAAGTCGCGCGCCATGTCGCACGACGACTCGATCGCGGCGTGGTAGATGGTCTCGAAG 195707 Query 22778 ATTTTCTTGTTCAATTCG-GCGGC---GGCGACGCTTTCGTACGGCATACGCATCATCAC 22833 |||| |||||| | | | ||| | ||||| ||| ||||||| || || Sbjct 195708 ATTTGCTTGTTGAGCTTGCGCGCCTCGGGCGAA----TCGAACGGCATCGCCAAGGCCAT 195763 Query 22834 GAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACAC 22893 ||||||||| || | ||| || || || || ||||| || |||| | || || Sbjct 195764 GAACGCGTCGGCGAGACCTTGCACTCCGATGCCGATGGGGCGGTGGCGGAAGTTGGAGTT 195823 Query 22894 TTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCAC 22953 | |||||| | ||||| | || ||||| | | ||||||||| | || Sbjct 195824 CTGCGCCTCGATGACGGGATAGTAGTTAACGTCGATGATGCGGTTCAAGTTGAAAGCGAC 195883 Query 22954 AATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACAACAAACTT 23013 | || | | |||||||||| |||| || | | || || Sbjct 195884 GACCTTGACGACCTCGTGCAACTTCTTAAAGTCGTAAGCGCCG--TTCTTGATGAAGCTC 195941 Query 23014 GTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTAC 23073 | ||| |||||||||| | ||||| ||||| |||||| | || |||||| | Sbjct 195942 GGCAACG-CGATCGAGGCCAAGTTGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGAT 196000 Query 23074 AATTTCGGTACATAGATTGCTAC-ACTTTATCGTGCCCAAATTGCTCTGGTT-GCTTTTT 23131 || ||||| || || || | || |||| |||||||| | || | ||||| | ||||| Sbjct 196001 GATCTCGGTGCACAGGTT-CGACGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTTT 196059 Query 23132 CGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATG 23191 | | || | || |||||||||||| | || |||| || |||||||| | || | Sbjct 196060 TGTTCGCG-GCGTCTTTGTAGAGCATGAAGGGGTTGCCAGTTTCGACCTGGGCTTCAAGA 196118 Query 23192 ATCGCTCGCCACATAGTCTGAGCGTGAACACGTCG-CACGTACCTGCCTTCTTCCTCGTA 23250 ||||| ||| | | || ||| | | |||| | | | ||| || | ||||| Sbjct 196119 ATCGCGTACCAAAGTTTTTGCGCGGGGAT-CGTCTTCTTGGCGCGGCCCTCCTTTTCGTA 196177 Query 23251 CTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCAT 23310 |||| | |||| ||| || || | || || ||| |||||||| | || || Sbjct 196178 TTTTTCGAACAAGGCGCGGAACTCTTCGCCATAGACTTCGTGGAGGCCGGGGGCTT-CAG 196236 Query 23311 CGGA-CACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTA 23369 ||| || | ||| |||| | | || || || |||||| ||||| || | Sbjct 196237 CGGGGCAGAAGAGGGGCCACTCGCCGGCGGCCTCGACACGCTCCATAAACAGATCGGGAA 196296 Query 23370 TCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCA 23429 |||| || || |||| || || || ||||| || ||||| ||||| |||||| | Sbjct 196297 TCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCATGGTTCTTGCGAA 196356 Query 23430 AATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCG 23489 |||| || || || ||||| || ||||| ||||||||||| | || || || || | Sbjct 196357 GGTCCAGGAACTCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGATCGCGAAGGCTCCGG 196416 Query 23490 GTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCG 23549 | | ||| ||||| || || |||||||| || || ||||||||||| || | ||||| | Sbjct 196417 GACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGG 196476 Query 23550 GCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGT 23609 | |||| ||||| || |||| |||||| | || || | || || | || Sbjct 196477 GGACGATGCCGTTCGAGTAGCCGTTCGTGCCCGCGATGTAGGAGCCGGTCGCGCGGATGT 196536 Query 23610 TGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAG 23669 |||| | | ||||| || || ||| | | || || || | |||||| || || | Sbjct 196537 TGTGGATGCTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCG 196596 Query 23670 TGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTT 23729 ||||||||||||| || || || || || ||| ||||| ||||||||| || | | Sbjct 196597 TGTCGTAGATGCCTTCAATCGAATCATCCTTCATCGTGACCAGGAAACACGACGAAAGCT 196656 Query 23730 GCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCG 23789 ||| | ||||| |||| ||| |||||||| |||||| || ||||| | | | Sbjct 196657 GCGGGTGAGGCGTTCCGGCATTGAAGAGTGTCGGCGAGGCGTGGGTGAAGTAGCGCTCAG 196716 Query 23790 ACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGA 23849 |||| || ||||||| | | | || || ||||| | || || || || | ||||| Sbjct 196717 ACATGAGGTTGTACGATTGCAAGACGCGCTCGATGTCGTGACCATGGATGCCAACGGCGA 196776 Query 23850 CGCGCATCATCATGT 23864 | ||||| | ||||| Sbjct 196777 CACGCATGAGCATGT 196791 >seq65 Length=1908199 Score = 118 bits (130), Expect = 9e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || || |||||| || || |||||||| || ||||| ||||||||| |||| || || | Sbjct 1743547 AATCAGGCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTC 1743488 Query 31249 GTCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 |||||||| |||| | ||||| || ||| | |||||||||||| | ||||| | Sbjct 1743487 GTCCGACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAG 1743429 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||| ||||| || || || ||||| ||| | || || ||| | ||||| Sbjct 1743428 ACCAGCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCCGATT 1743369 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| ||||| || ||||| || || |||| || Sbjct 1743368 ACAACATCCAAAAGGAGTCGACCCTCCACTTGGTCCT 1743332 >seq73 Length=1824528 Score = 113 bits (124), Expect = 4e-20 Identities = 170/239 (71%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 ||||||| || || ||||| || || ||||| || |||||| |||| || || |||||| Sbjct 212869 TGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 212810 Query 31254 ACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| |||| | ||||| || ||| | |||||||||||| | ||||| |||||| Sbjct 212809 ACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAGACCAG 212751 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || ||||| ||| | || || ||| | |||||| ||| Sbjct 212750 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCCGATTACAAC 212691 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAGCG 31427 || ||||| || ||||| || || |||| || | ||| | || ||| ||||||| Sbjct 212690 ATCCAAAAGGAGTCGACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGTGCCAAGAAGCG 212632 >seq109 Length=1431625 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || ||||| ||||||||| |||| || || |||| Sbjct 870619 ATGCAAATCTTCGTCAAGACGCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCG 870678 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | | ||||||||||| | || || ||||| Sbjct 870679 GACACGATTGACAACGTCAAGACCAAGATTCAAG-ACAAGGAAGGCATTCCCCCAGACCA 870737 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| | || || |||||||| ||| | || || || | |||||| || Sbjct 870738 ACAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAA 870797 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||| || || |||| || Sbjct 870798 CATCCAGAAGGAGTCGACGCTCCACTTGGTGCT 870830 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 625312 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 625371 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||| ||||| ||| | || || ||||| Sbjct 625372 GACACGATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCAGACCAA 625431 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || || |||||||||||| | || || || | |||||| ||| Sbjct 625432 CAACGACTGATCTTTGCTGGCAAACAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAC 625491 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| || || |||| || Sbjct 625492 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCT 625523 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 625540 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 625599 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||| ||||| ||| | || || ||||| Sbjct 625600 GACACGATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCAGACCAA 625659 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || || |||||||||||| | || || || | |||||| ||| Sbjct 625660 CAACGACTGATCTTTGCTGGCAAACAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAC 625719 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| || || |||| || Sbjct 625720 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCT 625751 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| ||||||||| |||| || || |||| Sbjct 870163 ATGCAGATCTTCGTTAAGACGCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCG 870222 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | | ||||||||||| | || || ||||| Sbjct 870223 GACACGATTGACAACGTCAAGACCAAGATTCAAG-ACAAGGAAGGCATTCCCCCAGACCA 870281 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| | || || |||||||| ||| | || || || | |||||| || Sbjct 870282 ACAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAA 870341 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||| || || || ||||| || || |||| Sbjct 870342 CATCCAGAAGGAGTCGACGCTCCACTTGGT 870371 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| ||||||||| |||| || || |||| Sbjct 870391 ATGCAGATCTTCGTCAAGACGCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCG 870450 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | | ||||||||||| | || || ||||| Sbjct 870451 GACACGATTGACAACGTCAAGACCAAGATTCAAG-ACAAGGAAGGCATTCCCCCAGACCA 870509 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| | || || |||||||| ||| | || || || | |||||| || Sbjct 870510 ACAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAA 870569 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||| || || || ||||| || || |||| Sbjct 870570 CATCCAGAAGGAGTCGACGCTCCACTTGGT 870599 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 625084 ATGCAAATTTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 625143 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||| ||||| ||| | || || ||||| Sbjct 625144 GACACGATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCAGACCAA 625203 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || | || ||||| ||||| ||| | || || || | |||||| ||| Sbjct 625204 CAACGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAC 625263 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| || || |||| || Sbjct 625264 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCT 625295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765580904240