Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015965.1_202016-12- 23] 147 sequences; 31,827,297 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq62 123 3e-23 >seq62 Length=232403 Score = 123 bits (136), Expect = 3e-23 Identities = 419/647 (65%), Gaps = 12/647 (2%) Strand=Plus/Plus Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307 |||||| ||| | ||| || || | |||||| ||||| |||||||| || || | || Sbjct 196253 CCACTCGCCGGCGGCCTCGACACGCTCCATAAACAGATCGGGAATCCAGAGCGCAAAGAA 196312 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 ||||| | | | |||||| || || ||||| ||| || |||||| | | Sbjct 196313 GAGATCACGAGCGCGGACTTCCTCCTTGCCATGGTTCTTGCGAAGGTCCAGGAACTCGAA 196372 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 | |||| ||||| || || | ||| || || | |||| || || ||||| || || Sbjct 196373 GACGTCAGCGTGCCATGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACC 196432 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 || || | ||| | |||||||| || || || | | ||| || | || ||||| || Sbjct 196433 TTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGA 196492 Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACC 63547 || || || || | ||| ||| || | || || || || || | ||| Sbjct 196493 GTAGCCGTTCGTGCCCGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACC 196552 Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTGTCATAGATGCCTT 63606 || || || || | || ||||| | ||||| ||| || | |||||| |||||||||| Sbjct 196553 GATACCACCGGCGGTCTTGGAGATGAGCGCGCA-CGTCTTGAGCGTGTCGTAGATGCCTT 196611 Query 63607 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTC 63666 | || |||||| |||| | | || ||||| || | || | ||| |||| Sbjct 196612 CAATCGAATCATCCTTCATCGTGACCAGGAAACACGACGAAAGCTGCGGGTGAGGCGTTC 196671 Query 63667 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63726 | ||||| || | || || || ||||| || || | ||||| | || ||||||| Sbjct 196672 CGGCATTGAAGAGTGTCGGCGAGGCGTGGGTGAAGTAGCGCTCAGACATGAGGTTGTACG 196731 Query 63727 -TCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATTAA 63781 | ||| | | || || || |||| |||| || || ||||||||||| | Sbjct 196732 ATTGCAAGA-CGCGCTCGATGTCGTGACCATGGATG----CCAACGGCGACACGCATGAG 196786 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 ||||||||| || | ||| | | ||| || || | ||||||||| || | Sbjct 196787 CATGTGCTGCGGGCGTTCGGCTACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGCTCGAG 196846 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 63888 ||||| || ||||| |||||||| || || || ||||| |||| Sbjct 196847 CGTTTTGAAGCCAAAGTAGTTGTAGCCGAAATCGCGGTCGTAGATAA 196893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816442710160