Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015965.1_202016-12- 23] 147 sequences; 31,827,297 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq60 104 3e-17 seq62 102 1e-16 >seq60 Length=1146088 Score = 104 bits (114), Expect = 3e-17 Identities = 173/243 (71%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || |||| | |||||| || || |||| ||||||||||| | ||||||| | || || Sbjct 223644 ATCTGGGCACAGTACAAGAAAGCCGAGGCATCCTTTTGGACCGCCGAAGAGATGGACTTG 223703 Query 125079 TCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 |||||||| || |||| ||||| || | | | || ||||| | || || || Sbjct 223704 TCCAAGGATATGCACGACTGGGACAACAAGCTCAAGCCCGAC-GAGCGCTACTTCATCTC 223762 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACG 125197 |||| | | ||||| || |||| |||||| || ||||||||||| || || | || Sbjct 223763 GCACGTCCTCGCCTTTTTCGCCGCCTCCGACGGCATCGTCAACGAGAACTTGGTCGAGCG 223822 Query 125198 ATTCTCTCAAGAGTTGACCATTC--CAGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254 ||||||| ||| | ||| || | |||| ||| ||||| ||||| || |||||||| Sbjct 223823 ATTCTCTGGTGAG--GTCCAGTCAGCCGAGG-CTCGATGCTTCTACGGTTTTCAAATCAT 223879 Query 125255 GAT 125257 ||| Sbjct 223880 GAT 223882 >seq62 Length=232403 Score = 102 bits (112), Expect = 1e-16 Identities = 346/531 (65%), Gaps = 6/531 (1%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || |||||| || | | ||| | || || |||||| | | ||||| | | || Sbjct 196504 ACGAACGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCTACAACAACACCGCGCGC 196445 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| || || ||||| || || || || || | || ||||| | || || ||| Sbjct 196444 TACGTCGACCAAGGTGGCAACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCATGG 196385 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||||| ||||| || || || | || | ||||| ||| |||| || || | || Sbjct 196384 CACGCTGACGTCTTCGAGTTCCTGGACCTTCGCAAGAACCATGGCAAGGAGGAAGTCCGC 196325 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 || | || | || | ||| |||||| | || ||| |||| ||| |||| ||| | | | Sbjct 196324 GCTCGTGATCTCTTCTTTGCGCTCTGGATTCCCGATCTGTTTATGGAGCGTGTCGAGGCC 196265 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 | ||| | ||| ||| | ||||||| | ||||| || ||| || ||| Sbjct 196264 GCCGGCGAGTGGCCCCTCTTCTGCCCCGCTGAAGCCCCCGGCCTCCACGAAGTCTATGGC 196205 Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTG-AGACGAGT 97165 |||||||| ||| || | ||||| | |||||||| | | |||||| | Sbjct 196204 GAAGAGTTCCGCGCCTTGTTCGAAAAATACGAAAAGGAGGGCCGCGCCAAGAAGACGA-T 196146 Query 97166 CGATGCACGAGAACTGTGGAAGGCCA-TCGTGACGGCTCAGGTAGAGACTGGAACTCCGT 97224 | || | | |||| ||| | || | || ||| || ||||| || ||||| | || | Sbjct 196145 CCCCGCGCAAAAACTTTGGTACGCGATTCTTGA-AGCCCAGGTCGAAACTGGCAACCCCT 196087 Query 97225 ACATTCTCTACAAGGATACCGTGAATCGCAACAGC-AACCAACGCCACTTGGGCACCATC 97283 ||| |||||||| || ||| ||| | || | | |||||| || | ||||| ||| Sbjct 196086 TCATGCTCTACAAAGACGCCGCGAA-CAAAAAATCGAACCAAAAGAACCTTGGCACGATC 196028 Query 97284 AAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 ||| || || |||||||| || || | |||||| | | ||||||||| Sbjct 196027 AAGTCGTCGAACCTGTGCACCGAGATCATCGAGTACTCGGCGCCGGACGAG 195977 Score = 96.9 bits (106), Expect = 5e-15 Identities = 132/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 98037 ATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGA 98096 ||||||||||| ||||||||| | || ||||| | |||||| || | ||||| || Sbjct 195049 ATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACTATTATCGATCTGTCGGCCGATCGA 194990 Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGT 98156 || | || ||| |||||| |||||| |||| | || ||| |||||||| | | | Sbjct 194989 GGCGCCTTCATCGACCAGTCGCAATCGCTCAACATCCAC-TTGTCGAGCCCAACGA-TGG 194932 Query 98157 CGTA--TGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACT 98214 || | | || ||||| ||||| |||| ||||| || || |||||||||||||||| Sbjct 194931 CGCAACTCACGTCGATGCACTTCTACGGCTGGAAGCGAGGACTGAAGACGGGCATGTACT 194872 Query 98215 A 98215 | Sbjct 194871 A 194871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057838303720