Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015965.1_202016-12- 23] 147 sequences; 31,827,297 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq73 93.3 9e-14 seq54 87.8 4e-12 >seq73 Length=1824528 Score = 93.3 bits (102), Expect = 9e-14 Identities = 190/277 (69%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896 ||||| |||||| |||| || ||||| || || |||| || | | ||||| || Sbjct 1166623 TGCACGCTCATCTTGACCGAAGGAGATTCCGCCAAGGCGCTCGCCGTCTCGGGTCTGGCT 1166564 Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956 || || ||||| || | |||||| ||||||| | || || ||| ||||||||||||| Sbjct 1166563 GTCGTCGGTCGAGACAACTATGGTGTCTTCCCTTTGCGAGGAAAGTTGCTCAACGTGCGT 1166504 Query 217957 GATGCCTCGGTTTCAAGCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAATCCT 218015 || || ||| |||| | || | ||||| |||||| || |||||||| ||| | Sbjct 1166503 GAAGCGGCGG-GCAAAGCCCTCCTCGACAATGCCGAGATTCAAGCGATCAAGCAGATCTT 1166445 Query 218016 GGGTCTTCAGGTTGGAAAGACTTACAAGGATG-CGTCATCTCTGCGTTATGGCTCTGTCA 218074 |||||| ||| || || ||||| || | || | || || ||||| ||| ||| Sbjct 1166444 GGGTCTGCAGCAGGGCAAAGTTTACACCGACGTCGAC-TCGCTCCGTTACGGCAAGCTCA 1166386 Query 218075 TGCTTATGACTGATGCTGATGTTGACGGGTCCCACAT 218111 || | ||| | ||| ||| || || || ||||| Sbjct 1166385 TGATCATGGCCGATCAAGATCACGATGGATCGCACAT 1166349 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| ||||||||||||||| ||||| | ||||||||||| || |||| |||||||||| Sbjct 1039381 GCCTGGTTAGCTCAGTCGGCAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 1039322 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 1039321 CCCGCATCGGGC 1039310 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| ||||||||||||||| ||||| | ||||||||||| || |||| |||||||||| Sbjct 1044863 GCCTGGTTAGCTCAGTCGGCAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 1044922 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 1044923 CCCGCATCGGGC 1044934 Score = 86.0 bits (94), Expect = 1e-11 Identities = 247/380 (65%), Gaps = 0/380 (0%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 || |||||| |||||||| | || || |||||| | || | ||| ||||||||| Sbjct 1165939 GATTTCATCAACAAGGAGTTGATCCTCTTCTCGATGGCCGACAACGTGCGCTCTATTCCC 1165880 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 || | ||||| |||| || || || ||| || | || | |||||||| Sbjct 1165879 TCTGTCATTGATGGGTTCAAACCGGGTCAACGCAAGGTCTTGTTCGGTTGCTTCAAGCGC 1165820 Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697 || || || || || ||||||| || || ||||| || |||| || | Sbjct 1165819 AAGTTGACGCAGGAGATCAAGGTCGGACAATTGGGCGGTTACGTCGCCGAGCACTCGGCG 1165760 Query 218698 TACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTG 218757 |||||||||||||| |||| |||| || |||| | ||| |||| || | | || Sbjct 1165759 TACCATCACGGTGAAATGAGTTTGCAAGGCACCATCATCGGCCTGGCGCAACAGTTCGTC 1165700 Query 218758 GGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGT 218817 || |||||| | ||| | || ||| |||||||| |||||| | ||||| ||| Sbjct 1165699 GGGTCCAACAACCTCAACATTCTCGACCCGAACGGTCAATTTGGTACGCGTCTGCAAGGT 1165640 Query 218818 GGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAG 218877 || || || ||||| || | || ||||| || || | || || | ||||| Sbjct 1165639 GGTAAAGACGCGGCTTCGGCTCGTTACATCTTCACGAACGTATCATCCATCACGCGTAGC 1165580 Query 218878 GTGTTCAATCAGGCCGATGA 218897 || ||| ||| || ||||| Sbjct 1165579 GTCTTCCATCCCGCTGATGA 1165560 >seq54 Length=1770975 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || ||||| ||||| |||||||||||||| || | | || ||||| || | Sbjct 1154006 GGATCGCTGTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCCATCCTGTTCGAG 1154065 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| | || |||| || ||||| || |||||| ||||| ||||| |||||| Sbjct 1154066 GCCGATATTCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTTAACGTCGCCTGG 1154125 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | | ||||| || |||| || | ||| |||| ||||| |||||||| Sbjct 1154126 CTCGAGAATTACCTCACGTCGCTGACGACGTGCACGTCCATCATCGTCTCGCACGACTCG 1154185 Query 279879 GGCTTCCT 279886 |||||||| Sbjct 1154186 GGCTTCCT 1154193 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || ||||| ||||| |||||||||||||| || | | || ||||| || | Sbjct 1160279 GGATCGCTGTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCCATCCTGTTCGAG 1160220 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| | || |||| || ||||| || |||||| ||||| ||||| |||||| Sbjct 1160219 GCCGATATTCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTTAACGTCGCCTGG 1160160 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | | ||||| || |||| || | ||| |||| ||||| |||||||| Sbjct 1160159 CTCGAGAATTACCTCACGTCGCTGACGACGTGCACGTCCATCATCGTCTCGCACGACTCG 1160100 Query 279879 GGCTTCCT 279886 |||||||| Sbjct 1160099 GGCTTCCT 1160092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834864133627