Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015965.1_202016-12- 23] 147 sequences; 31,827,297 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq73 89.7 1e-12 >seq73 Length=1824528 Score = 89.7 bits (98), Expect = 1e-12 Identities = 710/1115 (64%), Gaps = 64/1115 (6%) Strand=Plus/Plus Query 297464 TCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGG--CAACAACCAGTTGATGT 297521 || |||||||| |||| | || ||| || || || | ||| | | || ||||| || Sbjct 1165632 TCTTTACCACCTTGCAGACGCGTACCAAATTGACCGTTCGGGTCGAGAAT--GTTGAGGT 1165689 Query 297522 TATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGC 297581 | ||| ||||| | | || || ||| | |||||| ||||||| | ||| | Sbjct 1165690 TGTTGGACCCGACGAACTGTTGCGCCAGGCCGATGATGGTGCCTTGCAAACTCATTTCAC 1165749 Query 297582 CATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGG 297641 | || || || || ||||| || |||||||||| || ||| | ||||| | || Sbjct 1165750 CGTGATGGTACGCCGAGTGCTCGGCGACGTAACCGCCCAATTGTCCGACCTTGATCTCCT 1165809 Query 297642 TCGTCAAATTGCGCTTGAA--AGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACC 297699 |||||| ||||||||||| | | || | | || || |||||| |||||||| || Sbjct 1165810 GCGTCAACTTGCGCTTGAAGCAACCGA--ACAAGACCTTGCGTTGACCCGGTTTGAACCC 1165867 Query 297700 ATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAAAATAAGTTCCTT 297759 ||||| ||| || ||||| || | ||| | |||||| | || | ||||| Sbjct 1165868 ATCAATGACAGAGGGAATAGAGCGCACGTTGTCGGCCATCGAGAAGAGGATCAACTCCTT 1165927 Query 297760 GTCGATGAAGT-CGGGAACGGGAACCTCGGGCTTCTTGTGGTCAAGTTGATTTCCTGGTT 297818 || |||||| | | || |||| || |||| | ||||||| || | | || || Sbjct 1165928 GTTGATGAAATCCTCGATCGGG-ACTTCGGCGATGCTGTGGTCGAGGTACGTGCCGGGGA 1165986 Query 297819 CGTATGCCGTC--ATCCACTCCTTGCGATCCTCGGC--TCGTGACTTGTTGAA----AGA 297870 || | ||| || | ||| |||||||| | ||||| || | ||||||||| | Sbjct 1165987 CG-AAGCC-TCGGAGCCATTCCTTGCGGTTGTCGGCCTTCTT--CTTGTTGAAGGCCATG 1166042 Query 297871 ACGGTCAAT--GAGCTC-TCCGGAATCGGAAGTCCACATAAACGTCTTCATGAGAGACTT 297927 || ||||| | |||| ||| | ||| | | | |||| || | || ||| Sbjct 1166043 TCGATCAATTCGCGCTCTTCCTGCGTCGAAGGGC----GGAACG---GCAAGCGATGCTT 1166095 Query 297928 ---CAGATTGCTGAAGTATTTTTTGGCATCTGCACTGG---AACTCGTACCAAGCCCCTT 297981 || |||| ||||| || || | | |||| ||||||||| | ||||| Sbjct 1166096 GTCCATGTTGCCAAAGTACTTAACCGCGT---CCCTGGCGTCACTCGTACCCAATCCCTT 1166152 Query 297982 AAAATACTTG----GTCGTCCATTTCTTCAT-ATCTTGTGTCTT-CACGAAGTCTTCGAA 298035 || |||||| | | |||| | ||| ||| || |||| | | | ||| | Sbjct 1166153 GAAGTACTTGATGCGCCATCCACGAC--CATCATC-GGTCTCTTCCTTCCATTGCTCGTA 1166209 Query 298036 GTCAGGAAGACTGAAAAATTCTCTGACTTCT--TTTCCCTTCCTGGCAACTACGATAGGC 298093 | ||||| |||||||| ||| || || ||||| | || ||||| || Sbjct 1166210 CTGAGGAATTGTGAAAAAT--GACAACTCCTTGTTCCCCTTGGTCGCCTTGACGATGGGG 1166267 Query 298094 GTGATGAACTTCTTCAAGAA-CCCTGGAATTTCTAGAAGATTAGGGAAACAGCTATGGAA 298152 ||||| |||| |||||| |||| | || || | |||||| ||| || || Sbjct 1166268 GTGATAAACTCGAGCAAGAAGCCCTTCAGCTT-GAGCAACGAAGGGAACCAGTAATCGAG 1166326 Query 298153 AAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCATGATCAT 298212 ||||| |||| ||||| ||||| | ||| || ||| |||| ||||||||| Sbjct 1166327 GAAGTTGATGATCAGACCCTTGATGTGCGATCCATCGTGATCTTGATCGGCCATGATCAT 1166386 Query 298213 CACATGACCGTAACGAAGCGAG--GACGTGTCTTTGTACACTTTACCGGTTTGAAGGCCG 298270 | | |||||||| |||||| ||| ||| |||| ||||| || || || || Sbjct 1166387 GAGCTTGCCGTAACGGAGCGAGTCGAC--GTCGGTGTAAACTTTGCCCTGCTGCAGACCC 1166444 Query 298271 AGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGA-TGCTTGCCACGGATGCATC 298329 | || || |||| |||| || || | || | || |||| | | | || || Sbjct 1166445 AAGATCTGCTTGATCGCTTGAATCTCGGCATTGTCGAGGAGGGCTTTGC-CCGCCGCTTC 1166503 Query 298330 GCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACCAC 298389 || || || | | ||||| || | |||||| || ||||| | || |||||||| || Sbjct 1166504 ACGCACGTTGAGCAACTTTCCTCGCAAAGGGAAGACACCATAGTTGTCTCGACCGACGAC 1166563 Query 298390 GGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTGCA 298449 | ||| || | || || || | | |||||||| || || |||| ||||| ||||| Sbjct 1166564 AGCCAGACCCGAGACGGCGAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGCGTGCA 1166623 Query 298450 CATTTTGCTGTTATTCGTTCCAGCCCATGTAGCATCGTTGAGTTTGGGAATTCCAGTCAC 298509 | | | ||| |||| ||||| | ||||| | ||| ||| | || || | Sbjct 1166624 CTTGGACCCGTTCCTCGTACCAGCGTTGTTCGCATCTTCGAGCTTGACGAGACCCGTGAT 1166683 Query 298510 TCG-GATCTTCTTGGTACCGTCGGTCTTCTTCAGC 298543 || |||| |||| ||||| |||||||| ||| Sbjct 1166684 ACGCGATC-GCTTGTGTCCGTCCGTCTTCTTGAGC 1166717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102877922794450