Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015965.1_202016-12- 23] 147 sequences; 31,827,297 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq73 131 2e-25 seq109 127 2e-24 seq65 122 9e-23 >seq73 Length=1824528 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | || ||||||||| || |||||||| || ||||| || | Sbjct 212655 ACGGAGCACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCGGCGAGAGTGCGGCC 212714 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || || || ||||| || |||||||| | || | || ||||| Sbjct 212715 ATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTT 212774 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 ||| ||| || |||| ||| | | | ||||||| ||| || || |||| |||| Sbjct 212775 GTCTTGGATCTTGGTCTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGA 212833 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 42207 |||| |||||||| || ||||| ||||||||||||| Sbjct 212834 TGGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCA 212869 >seq109 Length=1431625 Score = 127 bits (140), Expect = 2e-24 Identities = 173/236 (73%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 41975 TTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 42034 |||| |||| || | | ||||| |||||| || | || |||||| || || ||||| Sbjct 870852 TTATTGACCCCCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTA 870793 Query 42035 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 ||| || || || || | || || |||||||| ||||| || || | |||||| ||||| Sbjct 870792 ATCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTC 870733 Query 42095 GGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCAC-CGTGTCGCTC 42152 | || | || |||||||| ||| | || || |||| ||| | || |||||| | Sbjct 870732 TGGGGGAATGCCTTCCTTGTCT-TGAATCTTGGTCTTGA-CGTTGTCAATCGTGTCCGAC 870675 Query 42153 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || |||| ||||| || |||||||| |||||||| || ||||||||||| Sbjct 870674 GACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGCGTCTTGACGAAGATTTGCAT 870619 Score = 122 bits (134), Expect = 9e-23 Identities = 161/218 (74%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||||||||| || | || |||||| || || |||||||| || || || || | Sbjct 870378 ACGCAACACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCC 870319 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| ||||| || || | |||||| ||||| | || | || ||||| Sbjct 870318 ATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGAATGCCTTCCTT 870259 Query 42113 GTCCATGATTTTTTGT-TTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 42170 || | ||| | || || |||| ||| | | | |||||| ||| || || |||| ||| Sbjct 870258 GT-CTTGAATCTTGGTCTTGA-CGTTGTCAATCGTGTCCGACGACTCGACCTCGAGGGTG 870201 Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || |||||||| |||||||| || ||||| ||||| Sbjct 870200 ATCGTCTTGCCCGTAAGCGTCTTAACGAAGATCTGCAT 870163 Score = 122 bits (134), Expect = 9e-23 Identities = 161/218 (74%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||||||||| || | || |||||| || || |||||||| || || || || | Sbjct 870606 ACGCAACACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCC 870547 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| ||||| || || | |||||| ||||| | || | || ||||| Sbjct 870546 ATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGAATGCCTTCCTT 870487 Query 42113 GTCCATGATTTTTTGT-TTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 42170 || | ||| | || || |||| ||| | | | |||||| ||| || || |||| ||| Sbjct 870486 GT-CTTGAATCTTGGTCTTGA-CGTTGTCAATCGTGTCCGACGACTCGACCTCGAGGGTG 870429 Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || |||||||| |||||||| || ||||| ||||| Sbjct 870428 ATCGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 870391 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | ||| | |||||| |||| || |||||| || || |||||||| || Sbjct 625539 ACCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGC 625480 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || ||||| || ||||| || || ||||| || ||||| | || Sbjct 625479 GAGCGTGCGGCCATCCTCGAGCTGTTTGCCAGCAAAGATCAGTCGTTGTTGGTCTGGGGG 625420 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCA 42159 | || |||||| ||| ||| || |||| ||| | | | |||||| || || | Sbjct 625419 AATGCCCTCCTTATCCTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGA 625361 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| |||||| || ||||| || || ||||| || ||||||||||| Sbjct 625360 CCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 625312 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | ||| | |||||| |||| || |||||| || || |||||||| || Sbjct 625767 ACCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGC 625708 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || ||||| || ||||| || || ||||| || ||||| | || Sbjct 625707 GAGCGTGCGGCCATCCTCGAGCTGTTTGCCAGCAAAGATCAGTCGTTGTTGGTCTGGGGG 625648 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCA 42159 | || |||||| ||| ||| || |||| ||| | | | |||||| || || | Sbjct 625647 AATGCCCTCCTTATCCTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGA 625589 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| |||||| || ||||| || || ||||| || ||||||||||| Sbjct 625588 CCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 625540 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||| | ||| | |||||| || | || |||||| || || ||||| || || Sbjct 625994 CCGCCTCGGAGACGGAGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 625935 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || |||||||| ||||| || || ||||| || ||||| | || Sbjct 625934 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGTCGTTGTTGGTCTGGGGGA 625875 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCAC 42160 | || |||||||||| ||| || |||| ||| | | | |||||| || || || Sbjct 625874 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAAGACTCGAC 625816 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| |||||| || ||||| || || ||||| || ||||||||||| Sbjct 625815 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 625768 >seq65 Length=1908199 Score = 122 bits (134), Expect = 9e-23 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || |||||||| || ||||| || | || || |||||||| || || || Sbjct 1743352 CTCCTTTTGGATGTTGTAATCGGCGAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 1743411 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| || |||||||| | || | || |||||||| ||| || |||| ||| Sbjct 1743412 GATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTGGTCTTGA-CGT 1743470 Query 42137 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||||| ||| || || |||| ||||| || |||||||| || ||||| | Sbjct 1743471 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGA 1743530 Query 42196 CAAAGATTTGC 42206 ||||||||||| Sbjct 1743531 CAAAGATTTGC 1743541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543211801846480