Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015965.1_202016-12- 23] 147 sequences; 31,827,297 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq65 109 5e-19 seq73 104 2e-17 seq109 96.9 3e-15 seq60 87.8 2e-12 >seq65 Length=1908199 Score = 109 bits (120), Expect = 5e-19 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||| | || | || || || | | | ||||||||||| |||||||| ||| Sbjct 1743316 GCCACCTCGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCGGC 1743375 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || |||||||| || || |||| | |||| ||||| || ||||| || || Sbjct 1743376 GAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGG 1743435 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || ||||| ||||| || | || || || | ||| || | ||||||| |||||| Sbjct 1743436 GATGCCTTCCTTGTC-TTGGATCTTGGTCTTGACGTTG-TCGATCGTGTCGGACGACTCG 1743493 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||||| || | ||| || || || ||||| || ||||| || ||| || Sbjct 1743494 ACCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACAAAGATTTGCCTG 1743544 >seq73 Length=1824528 Score = 104 bits (114), Expect = 2e-17 Identities = 162/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | | | ||||||||||| |||||||| ||| Sbjct 212644 CCACCACGCAGACGGAGCACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCGGCG 212703 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||||| || || |||| | |||| ||||| || ||||| || || Sbjct 212704 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGG 212763 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| || | || || || | ||| || | ||||||| |||||| | Sbjct 212764 ATGCCTTCCTTGTC-TTGGATCTTGGTCTTGACGTTG-TCGATCGTGTCGGACGACTCGA 212821 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCA 138613 |||||| || | || || || || || || || ||||| || |||| Sbjct 212822 CCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCA 212869 >seq109 Length=1431625 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || || || | | |||||||| || |||||||| ||| Sbjct 870389 CCACCGCGGAGACGCAACACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 870330 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| || || || | | |||| | ||||||||||| || || Sbjct 870329 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGA 870270 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | || || || | ||| || | ||||| | |||||| | Sbjct 870269 ATGCCTTCCTTGTC-TTGAATCTTGGTCTTGACGTTG-TCAATCGTGTCCGACGACTCGA 870212 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | ||| || || || || || || || || |||||||| Sbjct 870211 CCTCGAGGGTGATCGTCTTGCCCGTAAGCGTCTTAACGAAGATCTGCAT 870163 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || || || | | |||||||| || |||||||| ||| Sbjct 870617 CCCCCACGGAGACGCAACACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 870558 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| || || || | | |||| | ||||||||||| || || Sbjct 870557 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGA 870498 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | || || || | ||| || | ||||| | |||||| | Sbjct 870497 ATGCCTTCCTTGTC-TTGAATCTTGGTCTTGACGTTG-TCAATCGTGTCCGACGACTCGA 870440 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | ||| || || || || || || || || |||||||| Sbjct 870439 CCTCGAGGGTGATCGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 870391 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 |||||||| | ||| | || || || | | |||||||| || |||||||||||| Sbjct 625994 CCGCCTCGGAGACGGAGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 625935 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| || || || | | |||| || || |||||||| || || Sbjct 625934 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGTCGTTGTTGGTCTGGGGGA 625875 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | ||||| | ||||| ||| Sbjct 625874 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGACC 625815 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| | ||| || || ||||| || || || || || ||||| Sbjct 625814 TCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 625768 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| || || || | | |||||||| || |||||||| ||| Sbjct 870845 CCCCCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 870786 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| || || || | | |||| | ||||||||||| || || Sbjct 870785 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGA 870726 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | || || || | ||| || | ||||| | |||||| | Sbjct 870725 ATGCCTTCCTTGTC-TTGAATCTTGGTCTTGACGTTG-TCAATCGTGTCCGACGACTCGA 870668 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | ||| || || || || || || || || || ||||| Sbjct 870667 CCTCGAGGGTGATCGTCTTGCCCGTAAGCGTCTTGACGAAGATTTGCAT 870619 >seq60 Length=1146088 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 52698 TACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCAA 52756 ||||||||||| || || || || ||||||| | || ||||| || ||| || || Sbjct 224699 TACATCGAGTTCGTCGCCGACCGATTGTTGGT-CGCCTTGGGCAACCCCAAGGTCTGGAA 224757 Query 52757 CGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTT 52816 || || || || || |||||||||| || ||||| ||||||||||| |||||||| Sbjct 224758 AGCCGAGAACCCCTTCGACTTTATGAACATGATCTCGCTCGAGGGCAAGACAAACTTTTT 224817 Query 52817 CGAGAAGCGAGT 52828 ||||||||| || Sbjct 224818 CGAGAAGCGTGT 224829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261488117840