Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015965.1_202016-12- 23] 147 sequences; 31,827,297 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq62 105 1e-17 >seq62 Length=232403 Score = 105 bits (116), Expect = 1e-17 Identities = 132/176 (75%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 203888 TAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTT-T 203946 ||||||||||| ||||| || || || ||| ||||| | |||||| || | |||| Sbjct 194871 TAGTACATGCCCGTCTTCAGTCCTCGCTTCCAGCCGTAGAAGTGCATCGACGTGAGTTGC 194930 Query 203947 GCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGC 204006 || ||||||| || | || ||| ||||| || || || ||||||||| ||||||| Sbjct 194931 GCCATCGTTGGGCTC-GACAAGTGGATGTTGAGCGATTGCGACTGGTCGATG-AAGGCGC 194988 Query 204007 C-CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 | ||||| || | || || |||||| ||||| ||||| | |||||| || |||||| Sbjct 194989 CTCGATCGGCCGACAGATCGATAATAGTCTTTTGCGAGAGCTCCCAGACGGTCTTG 195044 Score = 87.8 bits (96), Expect = 3e-12 Identities = 284/433 (66%), Gaps = 6/433 (1%) Strand=Plus/Plus Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 |||||||||||| ||| ||||| || | | || |||||||| || | | | | || Sbjct 196277 CTCCATAAACAGATCGGGAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACTTCCTC 196336 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTA 205283 | ||| ||||||| | |||||| || || | | ||| |||||||| ||||| | Sbjct 196337 CTTGCCATGGTTCTTGCGAAGGTCCAG-GAACTCGAAGACGTCAGCGTGCCATGGCTCGA 196395 Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343 | | || | || || || | |||||| ||||| ||||| || ||| | | Sbjct 196396 GGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCGGTGT 196455 Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGG 205403 |||| | || || ||||| || || | ||||| | | |||||||||| |||| Sbjct 196456 TGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAGTAGCCGTTCGTGCCCGCGATGT 196515 Query 205404 CCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGA 205463 ||||| || | | |||| |||| | || || || || | ||||| || Sbjct 196516 AGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCGATACCACCGGCGGTCTTGGAGA 196575 Query 205464 TCTGGGCGCAC-TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC 205522 | | |||||| ||||| || ||| |||||||||| | || ||||| ||| || || Sbjct 196576 TGAGCGCGCACGTCTTG-AGCGTGTCGTAGATGCCTTCAATCGAATCATCCTTCATCGTG 196634 Query 205523 ACCAGATAGCACGAAGCCAGCT-TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCT 205581 ||||| | ||||| | |||| || || || || || | |||||| || || Sbjct 196635 ACCAGGAAACACGACGAAAGCTGCGGGTGAG-GCGTTCCGGCATTGAAGAGTGTCGGCGA 196693 Query 205582 GGCGTGGCTGAAG 205594 ||||||| ||||| Sbjct 196694 GGCGTGGGTGAAG 196706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795153738902320