Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015965.1_202016-12- 23] 147 sequences; 31,827,297 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq73 100 2e-16 seq65 95.1 8e-15 seq109 91.5 1e-13 >seq73 Length=1824528 Score = 100 bits (110), Expect = 2e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || || || ||||| || || | || | || |||| || Sbjct 212662 ACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCGGCGAGAGTGCGGCCATCCTCG 212721 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || |||||||||||| |||| | || |||||||| Sbjct 212722 AGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGG 212781 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | |||| || | ||| || |||| ||| ||||| || Sbjct 212782 ATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTG 212841 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCA 34980 |||||||| ||||| |||||||| |||| Sbjct 212842 CCCGTGAGGGTCTTGACAAAGATTTGCA 212869 >seq65 Length=1908199 Score = 95.1 bits (104), Expect = 8e-15 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || || || ||||| || || | || | || |||| || Sbjct 1743335 ACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCGGCGAGAGTGCGGCCATCCTCG 1743394 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || |||||||||||| |||| | || |||||||| Sbjct 1743395 AGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGG 1743454 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | |||| || | ||| || |||| ||| || || || Sbjct 1743455 ATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTG 1743514 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGC 34979 ||||| |||||||| |||||||| ||| Sbjct 1743515 CCCGTAAGAGTCTTGACAAAGATTTGC 1743541 >seq109 Length=1431625 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || || ||||| ||||| ||||| | || | || |||| || Sbjct 625976 ACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCCTCG 625917 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || |||||||| |||||| | || | ||||||||||| Sbjct 625916 AGCTGCTTGCCAGCAAAGATCAGTCGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 625857 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | |||| || | ||| || |||| || || || || Sbjct 625856 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGTCTTG 625797 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||| || ||||| |||||| Sbjct 625796 CCGGTCAGGGTCTTGACGAAGATTTGCATA 625767 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||| | || || ||||| ||||| || || | || | || |||| Sbjct 870603 CAACACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATC 870544 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||| || || ||||| || | ||| || |||||| | || | || |||||||| Sbjct 870543 CTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGAATGCCTTCCTTGTC 870484 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| |||||| | |||| || | ||| || |||| ||| || || Sbjct 870483 TTGAATCTTGGTCTTGACGTTGTCAATCGTGTCCGACGACTCGACCTCGAGGGTGATCGT 870424 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| || ||||| || |||||||||||| Sbjct 870423 CTTGCCCGTAAGCGTCTTGACGAAGATCTGCATA 870390 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||| | || || ||||| ||||| || || | || | || |||| Sbjct 870375 CAACACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATC 870316 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||| || || ||||| || | ||| || |||||| | || | || |||||||| Sbjct 870315 CTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGAATGCCTTCCTTGTC 870256 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| |||||| | |||| || | ||| || |||| ||| || || Sbjct 870255 TTGAATCTTGGTCTTGACGTTGTCAATCGTGTCCGACGACTCGACCTCGAGGGTGATCGT 870196 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| || ||||| || ||||||||||| Sbjct 870195 CTTGCCCGTAAGCGTCTTAACGAAGATCTGCAT 870163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633018398616