Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015965.1_202016-12-
23] 147 sequences; 31,827,297 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq62 212 1e-49
seq73 96.9 6e-15
seq60 89.7 1e-12
>seq62
Length=232403
Score = 212 bits (234), Expect = 1e-49
Identities = 701/1078 (65%), Gaps = 39/1078 (4%)
Strand=Plus/Plus
Query 221423 GCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG---GCCTCGGGAGAA 221479
|| ||||||||||||||||| ||||| ||||||||| |||| |||||||| |||
Sbjct 195684 GCGGCGTGGTAGATGGTCTCGAAGATTTGCTTGTTGAG---CTTGCGCGCCTCGGGCGAA 195740
Query 221480 GTGAAGGGCATACGC--AGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537
||| ||||| ||| || |||| | ||||||| || || || |||||||| ||||
Sbjct 195741 TCGAACGGCAT-CGCCAAGGCCATGAACG-CGTCGGCGAGACCTTGCACTCCGATGCCGA 195798
Query 221538 TGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGA 221597
|||| | ||| | |||||| ||| || |||||||| |||| |||||||
Sbjct 195799 TGGGGCGGTGGCGGAAGTTGGAGTTCTGCGCCTCGATGACGGGATAGTAGTTAACGTCGA 195858
Query 221598 TCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGA 221657
| | ||| | ||| | || || ||| || || |||||| || |||| || |
Sbjct 195859 TGATGCGGTTCAAGTTGAAAGCGACGACCTTGACGACCTCGTGCAACTTC------TTAA 195912
Query 221658 ACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCA 221717
| | | ||||| || || | | || | || ||| | || |||||
Sbjct 195913 AGTCGTAAGCGCCG--TTCTTGATGAAGCTCGGC-AACGCG--------ATCG-AGGCCA 195960
Query 221718 GGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGC 221777
||| || ||||| ||||||| | |||| |||||||| || || |||||
Sbjct 195961 AGTTGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATCTCGGTGCACAGGTTCG 196020
Query 221778 TGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGA 221837
||||||| || || |||| || || || || || || || ||||| |||||||
Sbjct 196021 ACGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTTTTGTTCGCGGCGTCTTTGTAGA 196080
Query 221838 GCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG 221897
|||| ||||| |||||| || | ||| || | |||||| || ||| |||| | |
Sbjct 196081 GCATGAAGGGGTTGCCAGTTTCGACCTGGGCTTCAAGAATCGCGTACCAAAGTTTTTGCG 196140
Query 221898 CGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTC-- 221955
|| | |||| ||||| | ||||| |||||| || | | || || | |
Sbjct 196141 CGGGGATCGTCTTCTTGGCGCGGCCCTC---CTTTTCGTA---TTTTTCGAACAAGGCGC 196194
Query 221956 -AAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCC 222014
|||| ||| || || | |||| ||||| || ||||| || | || ||
Sbjct 196195 GGAACTCTTCGCCATAGACTTCGTGGAGGCCGGGGGCTTCAGCGGGGCAGAAGAGGGGCC 196254
Query 222015 AGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGA 222074
| | | | | | ||| | || ||| || || || || ||||| ||||| ||||
Sbjct 196255 ACTCGCCGGCGGCCTCGACACGCTCCATAAACAGATCGGGAATCCAGAGCGCAAAGAAGA 196314
Query 222075 GATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAA 222134
|||| | | || |||||| ||| | ||| || | || |||| ||||| || |
Sbjct 196315 GATCACGAGCGCGGACTTCCTCCTTGCCATGGTTCTTGCGAAGGTCCAGGAACTCGAAGA 196374
Query 222135 TGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCT 222194
|||||||||||| ||||| || |||| || | || ||||| |||||||||||||| |
Sbjct 196375 CGTCAGCGTGCCATGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTT 196434
Query 222195 GATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATC 222254
| || || | | | |||| ||| || || | || || | ||||| ||
Sbjct 196435 GGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAGT 196494
Query 222255 GACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG-ACATGCCG 222313
||||| |||||| ||||| | ||| || | | ||| ||| | || |||
Sbjct 196495 AGCCGTTCGTGCCCGCGATGTAGGAGCCGGTCGCGCGGATGTT-GTGGATGCTCAAACCG 196553
Query 222314 ATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCC 222373
|||||||||||| || ||||| | ||||| ||||||| ||||| |||||| ||
Sbjct 196554 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGCCTTCA 196613
Query 222374 ATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAG 222433
|| || || ||||| | | | ||| ||||| ||||| | ||| | | | | | |
Sbjct 196614 ATCGAATCATCCTTCATCGTGACCAGGAAACACGACGAAAGCTGCGGGTGAGGCGTTCCG 196673
Query 222434 GCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACG 222491
|| || || || || || |||||| || ||||||| | |||||| || | |||||
Sbjct 196674 GCATTGAAGAGTGTCGGCGAGGCGTGGGTGAAGTAGCGCTCAGACATGAGGTTGTACG 196731
>seq73
Length=1824528
Score = 96.9 bits (106), Expect = 6e-15
Identities = 163/235 (69%), Gaps = 7/235 (3%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| |||| |||||||| | || ||| || ||| ||||||||||||| || ||
Sbjct 1428204 ATTTGGGCCATGTACAAACAAGCCCAAGCGTCCTTTTGGTCCGCCGAAGAGATCGACCTC 1428263
Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591
| ||| ||| | ||| |||| || |||| | ||| ||||| | | ||| ||
Sbjct 1428264 GGCAACGACCTCCACGACTGGCACCACAAGCTCAA--CAACGACGAACGCTACTTTATCG 1428321
Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651
||||| | || ||||| || || || ||||| | ||||| ||||||||| |||||
Sbjct 1428322 CCCACGTGCTCGCCTTCTTCGCCGCTTCGGATGGGGTCGTGAATGAGAATCTGGTCGAGA 1428381
Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706
| ||| | || || ||||||| || ||||| | ||| || || || || |||||
Sbjct 1428382 GGTTCTCGAGCGAGGTGCAGTTCGCCGAGGCGAGGTGCTTTTATGGGTTTCAGAT 1428436
>seq60
Length=1146088
Score = 89.7 bits (98), Expect = 1e-12
Identities = 140/200 (70%), Gaps = 3/200 (2%)
Strand=Plus/Plus
Query 25921 GGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT 25980
|| ||||| || ||||||||||||||||| || || |||||||| || ||||
Sbjct 224361 GGCTCGTTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGCTTGATGCCCGGATTGACCTTT 224420
Query 25981 TCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040
||||||||||||||| | |||||||| ||||||| || ||||| ||||| | | |
Sbjct 224421 TCCAACGAGCTCATCTCGCGTGACGAGGGCCTCCACACCGACTTTGCTTGCCTCTTGTTC 224480
Query 26041 ACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCT 26100
| |||| | | | |||| | || |||||| |||||||| |||||
Sbjct 224481 TC---CCACCTCGAGCGAAGACCTCACCCCGACACCGTCGCGCTCATCATCAAGGAGGCC 224537
Query 26101 GTGGAGATCGAGAAGGAGTT 26120
|| || || |||||||| ||
Sbjct 224538 GTCGAAATTGAGAAGGAATT 224557
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928843093247680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |