Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015965.1_202016-12- 23] 147 sequences; 31,827,297 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq62 212 1e-49 seq73 96.9 6e-15 seq60 89.7 1e-12 >seq62 Length=232403 Score = 212 bits (234), Expect = 1e-49 Identities = 701/1078 (65%), Gaps = 39/1078 (4%) Strand=Plus/Plus Query 221423 GCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG---GCCTCGGGAGAA 221479 || ||||||||||||||||| ||||| ||||||||| |||| |||||||| ||| Sbjct 195684 GCGGCGTGGTAGATGGTCTCGAAGATTTGCTTGTTGAG---CTTGCGCGCCTCGGGCGAA 195740 Query 221480 GTGAAGGGCATACGC--AGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537 ||| ||||| ||| || |||| | ||||||| || || || |||||||| |||| Sbjct 195741 TCGAACGGCAT-CGCCAAGGCCATGAACG-CGTCGGCGAGACCTTGCACTCCGATGCCGA 195798 Query 221538 TGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGA 221597 |||| | ||| | |||||| ||| || |||||||| |||| ||||||| Sbjct 195799 TGGGGCGGTGGCGGAAGTTGGAGTTCTGCGCCTCGATGACGGGATAGTAGTTAACGTCGA 195858 Query 221598 TCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGA 221657 | | ||| | ||| | || || ||| || || |||||| || |||| || | Sbjct 195859 TGATGCGGTTCAAGTTGAAAGCGACGACCTTGACGACCTCGTGCAACTTC------TTAA 195912 Query 221658 ACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCA 221717 | | | ||||| || || | | || | || ||| | || ||||| Sbjct 195913 AGTCGTAAGCGCCG--TTCTTGATGAAGCTCGGC-AACGCG--------ATCG-AGGCCA 195960 Query 221718 GGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGC 221777 ||| || ||||| ||||||| | |||| |||||||| || || ||||| Sbjct 195961 AGTTGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATCTCGGTGCACAGGTTCG 196020 Query 221778 TGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGA 221837 ||||||| || || |||| || || || || || || || ||||| ||||||| Sbjct 196021 ACGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTTTTGTTCGCGGCGTCTTTGTAGA 196080 Query 221838 GCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG 221897 |||| ||||| |||||| || | ||| || | |||||| || ||| |||| | | Sbjct 196081 GCATGAAGGGGTTGCCAGTTTCGACCTGGGCTTCAAGAATCGCGTACCAAAGTTTTTGCG 196140 Query 221898 CGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTC-- 221955 || | |||| ||||| | ||||| |||||| || | | || || | | Sbjct 196141 CGGGGATCGTCTTCTTGGCGCGGCCCTC---CTTTTCGTA---TTTTTCGAACAAGGCGC 196194 Query 221956 -AAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCC 222014 |||| ||| || || | |||| ||||| || ||||| || | || || Sbjct 196195 GGAACTCTTCGCCATAGACTTCGTGGAGGCCGGGGGCTTCAGCGGGGCAGAAGAGGGGCC 196254 Query 222015 AGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGA 222074 | | | | | | ||| | || ||| || || || || ||||| ||||| |||| Sbjct 196255 ACTCGCCGGCGGCCTCGACACGCTCCATAAACAGATCGGGAATCCAGAGCGCAAAGAAGA 196314 Query 222075 GATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAA 222134 |||| | | || |||||| ||| | ||| || | || |||| ||||| || | Sbjct 196315 GATCACGAGCGCGGACTTCCTCCTTGCCATGGTTCTTGCGAAGGTCCAGGAACTCGAAGA 196374 Query 222135 TGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCT 222194 |||||||||||| ||||| || |||| || | || ||||| |||||||||||||| | Sbjct 196375 CGTCAGCGTGCCATGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTT 196434 Query 222195 GATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATC 222254 | || || | | | |||| ||| || || | || || | ||||| || Sbjct 196435 GGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAGT 196494 Query 222255 GACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG-ACATGCCG 222313 ||||| |||||| ||||| | ||| || | | ||| ||| | || ||| Sbjct 196495 AGCCGTTCGTGCCCGCGATGTAGGAGCCGGTCGCGCGGATGTT-GTGGATGCTCAAACCG 196553 Query 222314 ATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCC 222373 |||||||||||| || ||||| | ||||| ||||||| ||||| |||||| || Sbjct 196554 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGCCTTCA 196613 Query 222374 ATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAG 222433 || || || ||||| | | | ||| ||||| ||||| | ||| | | | | | | Sbjct 196614 ATCGAATCATCCTTCATCGTGACCAGGAAACACGACGAAAGCTGCGGGTGAGGCGTTCCG 196673 Query 222434 GCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACG 222491 || || || || || || |||||| || ||||||| | |||||| || | ||||| Sbjct 196674 GCATTGAAGAGTGTCGGCGAGGCGTGGGTGAAGTAGCGCTCAGACATGAGGTTGTACG 196731 >seq73 Length=1824528 Score = 96.9 bits (106), Expect = 6e-15 Identities = 163/235 (69%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||| |||||||| | || ||| || ||| ||||||||||||| || || Sbjct 1428204 ATTTGGGCCATGTACAAACAAGCCCAAGCGTCCTTTTGGTCCGCCGAAGAGATCGACCTC 1428263 Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 | ||| ||| | ||| |||| || |||| | ||| ||||| | | ||| || Sbjct 1428264 GGCAACGACCTCCACGACTGGCACCACAAGCTCAA--CAACGACGAACGCTACTTTATCG 1428321 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 ||||| | || ||||| || || || ||||| | ||||| ||||||||| ||||| Sbjct 1428322 CCCACGTGCTCGCCTTCTTCGCCGCTTCGGATGGGGTCGTGAATGAGAATCTGGTCGAGA 1428381 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 | ||| | || || ||||||| || ||||| | ||| || || || || ||||| Sbjct 1428382 GGTTCTCGAGCGAGGTGCAGTTCGCCGAGGCGAGGTGCTTTTATGGGTTTCAGAT 1428436 >seq60 Length=1146088 Score = 89.7 bits (98), Expect = 1e-12 Identities = 140/200 (70%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 25921 GGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT 25980 || ||||| || ||||||||||||||||| || || |||||||| || |||| Sbjct 224361 GGCTCGTTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGCTTGATGCCCGGATTGACCTTT 224420 Query 25981 TCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 ||||||||||||||| | |||||||| ||||||| || ||||| ||||| | | | Sbjct 224421 TCCAACGAGCTCATCTCGCGTGACGAGGGCCTCCACACCGACTTTGCTTGCCTCTTGTTC 224480 Query 26041 ACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCT 26100 | |||| | | | |||| | || |||||| |||||||| ||||| Sbjct 224481 TC---CCACCTCGAGCGAAGACCTCACCCCGACACCGTCGCGCTCATCATCAAGGAGGCC 224537 Query 26101 GTGGAGATCGAGAAGGAGTT 26120 || || || |||||||| || Sbjct 224538 GTCGAAATTGAGAAGGAATT 224557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843093247680