Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015965.1_202016-12- 23] 147 sequences; 31,827,297 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq62 141 1e-28 seq75 129 7e-25 seq60 109 7e-19 seq73 87.8 2e-12 >seq62 Length=232403 Score = 141 bits (156), Expect = 1e-28 Identities = 548/857 (64%), Gaps = 13/857 (2%) Strand=Plus/Minus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| ||||| ||||||| ||||| | |||||||| || | ||||| || || Sbjct 196799 CCCGCAGCACATGCTCATGCGTGTCGCCGTTGGCATCCATGGTCACGACATCGAGCGCGT 196740 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 |||| | | ||| || ||||| | | |||| ||||| | || || ||||| Sbjct 196739 CTTGCAATCGTACAACCTCATGTCTGAGCGCTACTTCACCCACGCCTCGCCGACACTCTT 196680 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 |||||| || || || |||||| | || || ||||| || | | ||||| || Sbjct 196679 CAATGCCGGAACGCCTCACCCGCAGCTTTCGTCGTGTTTCCTGGTCACGATGAAGGATGA 196620 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 || || | || ||||| | || || | | ||| |||| ||||| ||| || || Sbjct 196619 TTCGATTGAAGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACCGCCGG 196560 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-ACA 75508 ||||| || || |||||| | | | || | ||| || ||| ||| || Sbjct 196559 TGGTATCGGTTTGAGCATCCACAACATCCGCGCGACCGG--CTCCTACATCGCGGGCACG 196502 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 || || | || | || || | || ||||| || || | ||| ||| |||||||| Sbjct 196501 AACGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCTACAACAACACCGCGCGCTAC 196442 Query 75569 GTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGG 75622 || | |||| || ||||| | || || ||||| ||||| | || |||||| Sbjct 196441 GTCGACCAAGGTGGCAACAAGCGTCCC---GGAGCCTTCGCGATCTACCTCGAGCCATGG 196385 Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 || || || || | |||||||| || | || ||||| || | || || | || Sbjct 196384 CACGCTGACGTCTTCGAGTTCCTGGACCTTCGCAAGAACCATGGCAAGGAGGAAGTCCGC 196325 Query 75683 TGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAG 75742 | | |||||||| | | || |||||||| || || || ||| |||| || |||| Sbjct 196324 GCTCGTGATCTCTTCTTTGCGCTCTGGATTCCCGATCTGTTTATGGAGCGTGTCGAGGCC 196265 Query 75743 GGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGT 75802 | || | ||| | || ||||| || | | || || || ||| ||| | || Sbjct 196264 GCCGGCGAGTGGCCCCTCTTCTGCCCCGCTGAAGCCCCCGGCCTCCACGAAGTCTATGGC 196205 Query 75803 GAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTA 75862 || ||||| ||| | | | ||| || ||| ||||||| | ||||| ||| | Sbjct 196204 GAAGAGTTCCGCGCCTTGTTCGAAAAATACGAAAAGGAGGGCCGCGCCAAGAAGACGATC 196145 Query 75863 CCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATAT 75922 || || | ||||| | || ||||| || | ||| || ||||| | || | Sbjct 196144 CCCGCGCAAAAACTTTGGTACGCGATTCTTGAAGCCCAGGTCGAAACTGGCAACCCCTTC 196085 Query 75923 ATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAG 75982 ||||| ||||| || || ||||| || ||||||||||| | || || |||||| Sbjct 196084 ATGCTCTACAAAGACGCCGCGAACAAAAAATCGAACCAAAAGAACCTTGGCACGATCAAG 196025 Query 75983 AGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGC 76042 || || || ||||| || || | |||||| | | ||| ||| || || ||| Sbjct 196024 TCGTCGAACCTGTGCACCGAGATCATCGAGTACTCGGCGCCGGACGAGTGCGCCGTCTGC 195965 Query 76043 AATTTGGCATCAATCGC 76059 || ||||| || ||||| Sbjct 195964 AACTTGGCCTCGATCGC 195948 >seq75 Length=589559 Score = 129 bits (142), Expect = 7e-25 Identities = 275/408 (67%), Gaps = 2/408 (0%) Strand=Plus/Minus Query 177559 TCAACAAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCT 177618 || ||||||| | | || | ||| ||||| |||||||||| ||| | || || | Sbjct 48908 TCGACAAACTCCTTGACGGGGTGGGTCTCACCCGTCGCGAGGACAAAGTCGTCGGGGGTG 48849 Query 177619 TCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTG 177678 ||||| || ||||| | |||||| | || || ||||| || || ||||| || | Sbjct 48848 TCTTGCTGCAGCATCATCCACATACCCTCGACGTAGTCGCGCGCGTGTCCCCAATCACGC 48789 Query 177679 GCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCTCACCTTTCACAATTTGTTTGACG 177738 || | | || ||||| | ||| | || | ||| | || | ||| Sbjct 48788 TTGGCCTCCATATTGCCGAGGTAGAGGCAGTCCTGTTGACCGAGCGAGATCTCGGCGACA 48729 Query 177739 CCATCAGTA-ATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAA 177797 | || | | |||||| | ||||||||| | ||| || | ||| || ||||||||||| Sbjct 48728 GC-TCGGGAGATCTTCCTCGTGACAAAGGTGCGACCACGACGCGGGGACTCGTGGTTGAA 48670 Query 177798 GAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGTG 177857 | ||| ||| ||| || ||||| || || || || ||||| || ||||||| |||| Sbjct 48669 CAAGATACCGTTGCACGCGTACATGCCGTACGACTCGCGGTAGTTCTTGACGATCCAGAA 48610 Query 177858 AGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGTTTG 177917 ||| ||| |||| ||| || || || || ||||||||||| ||| ||| | ||| Sbjct 48609 GGCGTACAACTTGGCGACTCCGTAAGGCGAACGAGGGTAGAAGGGCGTCGTCTCGGATTG 48550 Query 177918 TGGAGTTTCTCGGACTTTACCAAACATCTCCGAAGTTGAGGCTTGGTA 177965 || || || ||| || || ||| ||| ||||| ||||||||||| Sbjct 48549 AGGGGTCTCGACGACCTTGCCGTACAACTCGGAAGTCGAGGCTTGGTA 48502 >seq60 Length=1146088 Score = 109 bits (120), Expect = 7e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 177748 ATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATTCCG 177807 ||||| | ||||| ||| | || || | || || ||||||||||||||||| ||| Sbjct 407942 ATCTTTCTCGTGACGAAGGTGCGGCCACGGCGGGGGGACTCGTGGTTGAAGAGGATACCG 407883 Query 177808 GAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGTGAGCGGCCAAT 177867 ||| || ||||| | || || || ||||| || ||||||| |||| ||| ||| Sbjct 407882 TTGCACGCGTACATGTCGTACGACTCGCGGTAGTTCTTGACGATCCAGAAGGCGTACAAC 407823 Query 177868 TTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGTTTGTGGAGTTTCT 177927 |||| ||| || ||| || || ||||||||||| ||| ||| | || || || || Sbjct 407822 TTGGCGACTCCGTAGGGCGAGCGAGGGTAGAAGGGAGTCGTCTCGGACTGAGGGGTCTCG 407763 Query 177928 CGGACTTTACCAAACATCTCCGAAGTTGAGGCTTGGTA 177965 ||| || || ||| |||||| || ||||| ||||| Sbjct 407762 ACGACCTTGCCGTACAACTCCGAGGTCGAGGCCTGGTA 407725 >seq73 Length=1824528 Score = 87.8 bits (96), Expect = 2e-12 Identities = 228/340 (67%), Gaps = 12/340 (4%) Strand=Plus/Minus Query 13561 CAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATCTGGA--AAGTGTACTCTCATT 13618 |||| | || || |||||||| || |||||| | | | || ||||| || ||||| Sbjct 1166669 CAAGCTCGAAGATGCGAACAACGCTGGTACG--AGGAACGGGTCCAAGTGCACGCTCATC 1166612 Query 13619 GTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGTTGGTCGT 13678 | || || || ||||| || || | ||||| || ||||||| ||||||| ||||| Sbjct 1166611 TTGACCGAAGGAGATTCCGCCAAGGCGCTCGCCGTCTCGGGTCTGGCTGTCGTCGGTCGA 1166552 Query 13679 GATCACTACGGTGTGTTCCCACTTCGCGGTAAATGTAAGAATGTTCGGGACGCTTCGGTG 13738 || |||| ||||| ||||| | || || || | || || || || || ||| Sbjct 1166551 GACAACTATGGTGTCTTCCCTTTGCGAGGAAAGTTGCTCAACGTGCGTGAAGCGGCGG-- 1166494 Query 13739 GCACAGCTCACATCAAACCAG--GAG-TTCAA-CGATCTCAAGAAGATCCTTGGTCTTCA 13794 ||| ||| | | || | | ||| ||||| ||||| ||| ||||| | ||||| || Sbjct 1166493 GCAAAGCCCTCCTCGACAATGCCGAGATTCAAGCGATC--AAGCAGATCTTGGGTCTGCA 1166436 Query 13795 ACAAGGAAAAGACTACCAAGATGTTTCTGAACTTCGCTATGGTCGTCTTATGATTATGAC 13854 || || |||| ||| || || || || || || || ||||| ||| | Sbjct 1166435 GCAGGGCAAAGTTTACACCGACGTCGACTCGCTCCGTTACGGCAAGCTCATGATCATGGC 1166376 Query 13855 AGATGCCGATAATGATGGTTCTCACATCAAGGGTCTCATC 13894 ||| ||| | ||||| || |||||||||||||| ||| Sbjct 1166375 CGATCAAGATCACGATGGATCGCACATCAAGGGTCTGATC 1166336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568503803360